Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq208585 86.0 7e-12 seq116649 86.0 7e-12 seq17814 86.0 7e-12 seq2554 84.2 2e-11 seq5240 82.4 8e-11 >seq208585 Length=867 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/79 (85%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 79621 AGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-AC 79679 ||| |||| ||| |||| | || |||| ||||||||||||||||||||||||||| || Sbjct 476 AGAGTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAAC 535 Query 79680 CAATTGAGCTACGAAAGCA 79698 ||| |||||||||| |||| Sbjct 536 CAACTGAGCTACGAGAGCA 554 >seq116649 Length=1351 Score = 86.0 bits (94), Expect = 7e-12 Identities = 69/82 (84%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 79620 CAGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-A 79678 ||| ||||| ||| |||| | || |||| ||||||||||||||||||||||||||| | Sbjct 868 CAGTCTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAA 927 Query 79679 CCAATTGAGCTACGAAAGCAAA 79700 |||| |||||||||| ||| || Sbjct 928 CCAACTGAGCTACGAGAGCTAA 949 >seq17814 Length=6162 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 5421 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 5362 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 5361 TGAGCTACGAGAGC 5348 >seq2554 Length=28717 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 16358 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 16299 Query 79684 TGAGCTACGAAAGCAA 79699 |||||||||| ||||| Sbjct 16298 TGAGCTACGAGAGCAA 16283 >seq5240 Length=13051 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 ||||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 10710 CTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 10651 Query 79683 TTGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 10650 CTGAGCTACGAGAGC 10636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545111133656000