Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq1 565 3e-156 >seq1 Length=146306 Score = 565 bits (626), Expect = 3e-156 Identities = 700/955 (73%), Gaps = 2/955 (0%) Strand=Plus/Plus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGT- 176205 ||||| | || ||||||||||| | ||||| || | | ||||| | | ||| Sbjct 87901 TTTACATCGGGTGGTTTGGTGTTTTGATGATCCCTACATTATTGACTGCAACTTC-TGTA 87959 Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || || ||||| || || || || ||||| || |||||||| ||||| || Sbjct 87960 TTTATTATAGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTT 88019 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | ||||||||||| || |||||||| || || || || || | | || | || Sbjct 88020 TCTGGATCTCTACTTTACGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCA 88079 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || || || | ||||| || ||||| |||||||||||| | ||||| || ||| | ||| Sbjct 88080 GCTATAGGGTTGCACTTTTATCCAATATGGGAAGCAGCATCTGTTGATGAGTGGTTATAC 88139 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445 ||||| || || || | || |||| | |||||| | | ||| | | ||| ||| Sbjct 88140 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 88199 Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505 || || | ||||||||||||| | | || || |||||||||||||| ||||||||| Sbjct 88200 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATAT 88259 Query 176506 TCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCT 176565 || || || || | || || | || |||||| | |||| ||| ||||||||||| | Sbjct 88260 TCAGCTCCGGTTGCGGCGGCTACTGCGGTTTTCTTGATCTACCCAATCGGTCAAGGAAGT 88319 Query 176566 TTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAA 176625 || ||||||||||||||||| || ||||| ||||| |||||||| ||| |||||||||| Sbjct 88320 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 88379 Query 176626 GCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGT 176685 || ||||||||||| || ||||||||||| || ||| | || ||||| ||||| || || Sbjct 88380 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTGGGTGTAGCTGGTGTATTCGGC 88439 Query 176686 GGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACA 176745 || || || || || ||||| || | || |||||| | | || || || Sbjct 88440 GGCTCCCTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACC 88499 Query 176746 ACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAAC 176805 || ||||| ||||| || | ||||||| |||||| ||||| ||||| || || || Sbjct 88500 ACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAAT 88559 Query 176806 ATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAAC 176865 || |||||||| || ||||| |||||||| | |||||||| |||||| ||||||||| Sbjct 88560 ATCGTAGCTGCTCATGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAATAAT 88619 Query 176866 TCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCA 176925 || | | | ||||||||| | || || | || || || | || ||||||||||| Sbjct 88620 TCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCT 88679 Query 176926 ATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTA 176985 | ||| || |||| ||||| |||||| | || |||||||| |||||||| ||||| | Sbjct 88680 TTAGGTATTAGCACTATGGCGTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 88739 Query 176986 GACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGT 177045 || | ||| || ||| ||| |||| |||||| |||||||||| ||||||||| Sbjct 88740 GATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATCATTAACCGTGCTAACCTTGGT 88799 Query 177046 ATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTG 177100 |||||||||||||| || ||||||||||| |||||||| || ||| | ||||||| Sbjct 88800 ATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACTTAGCTGCTG 88854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 601173058790400