Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq9218 105 5e-18 seq51823 98.7 7e-16 seq35076 96.9 2e-15 seq31228 95.1 9e-15 seq18381 95.1 9e-15 seq150073 93.3 3e-14 seq9871 87.8 1e-12 seq20614 86.0 4e-12 seq12130 82.4 5e-11 >seq9218 Length=18002 Score = 105 bits (116), Expect = 5e-18 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| || || ||||| ||||||||| |||||| | || ||||||||| | Sbjct 14885 ATGCAGATTTTCGTCAAGACTCTAACTGGGAAAACTATTACCCTGGAAGTCGAAAGCTCG 14826 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| || || ||| || || |||||||| |||| || | Sbjct 14825 GACACCATTGACAAT--GTGAAGACAAAGATCCAGGATAAAGAAGGGATTCCTCCAGATC 14768 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| | || || |||||||||||||||||||| |||| || | | | | ||||||| Sbjct 14767 AGCAGAGATTGATCTTTGCCGGAAAACAATTGGAAGACGGGCGTACCCTAGCTGATTACA 14708 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 | || || || ||| ||| | |||||||| Sbjct 14707 ATATTCAGAAGGAGTCGACTCTCCATTTGGT 14677 >seq51823 Length=2487 Score = 98.7 bits (108), Expect = 7e-16 Identities = 165/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 27782 ATAGTAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCG 27841 ||| | | |||||||| || || || |||||||| || || || || |||| |||| Sbjct 1109 ATAATCAGATGCAAATCTTCGTTAAGACTCTTACCGGAAAGACAATCACTCTTGAGGTCG 1168 Query 27842 AAAGCACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCC 27899 | || ||||| || ||||| |||||| |||||| ||||| || ||| |||| Sbjct 1169 AGAGTTCCGACACAATCGACAAT--GTCAAAACAAAAATCCAAGACAAGGAGGGTATTCC 1226 Query 27900 GATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTC 27959 || |||||||| || || || || || |||||| | || |||| || | | | | Sbjct 1227 CCCAGACCAGCAACGTTTGATCTTCGCTGGTAAACAACTTGAAGACGGCCGAACCCTCGC 1286 Query 27960 CGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || |||||||||||||| ||| ||| | || ||||| | ||| | ||||| || Sbjct 1287 AGACTACAACATCCAAAAGGAGTCCACCCTCCACTTGGTCCTCCGTCTCCGTGGAGG 1343 >seq35076 Length=3390 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| ||||| || || |||||| || || |||| || || ||| | Sbjct 1617 ATGCAGATTTTTGTCAAAACGCTGACCGGGAAAACCATCACCCTTGAAGTTGAGAGCTCA 1558 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| |||||| || || || || |||||| |||| ||| | Sbjct 1557 GACACCATTGATAAT--GTCAAAACCAAGATTCAGGATAAGGAAGGTATTCCTCCGGACC 1500 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| || | || ||||||||||| ||| | || || | || | | || | || |||| Sbjct 1499 AGCAAAGGCTGATCTTTGCCGGAAAGCAACTTGAGGATGGCCGTACCCTGGCTGACTACA 1440 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| |||||| ||| | |||||||| | ||| || | || || Sbjct 1439 ACATCCAGAAAGAGTCCACCCTCCATTTGGTGCTCCGTCTGAGAGGTGG 1391 >seq31228 Length=3734 Score = 95.1 bits (104), Expect = 9e-15 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||||||||| || ||||| || ||||| |||| ||||| ||| | Sbjct 3547 ATGCAGATTTTTGTGAAAACCCTGACTGGAAAGACCATTACCCTTGAGGTCGAGAGCTCG 3488 Query 27850 GACG--ATGTACAATCGGTCAA-ACAAAAAAT-AGCCGACAAAGAAGGTGTTCCGATGGA 27905 ||| || ||||| ||||| || |||| | || || || || ||| |||| || Sbjct 3487 GACACAATTGACAAT--GTCAAGACCAAAATTCAG--GATAAGGAGGGTATTCCTCCAGA 3432 Query 27906 GCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTA 27965 |||||| || | || ||||| || || || |||| |||| || | ||| | || || Sbjct 3431 TCAGCAAAGGCTCATCTTTGCTGGTAAGCAGCTGGAGGACGGCCGTACTTTGGCAGACTA 3372 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| ||||| || |||| | ||| | ||| || | || || Sbjct 3371 TAACATCCAAAAGGAGAGTACCCTGCACCTTGTTCTCCGTCTGAGGGGTGG 3321 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||||||||| || || ||||| ||| || || |||| || || ||| | Sbjct 3319 ATGCAGATTTTTGTGAAGACGCTGACTGGCAAAACCATCACCCTTGAAGTTGAGAGCTCG 3260 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || ||||| ||||| ||| || ||||| || ||| | || || | Sbjct 3259 GACACTATTGACAAT--GTCAAGACAAAGATCCAAGACAAGGAGGGTATCCCCCCAGACC 3202 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| |||| || |||||||| || || |||| |||| || | ||| |||| || | Sbjct 3201 AGCAAAGGTTGATCTTTGCCGGTAAGCAGCTGGAGGACGGTCGTACTTTGGCCGACTATA 3142 Query 27968 ACATCCAAAAAGAG 27981 ||||||| || ||| Sbjct 3141 ACATCCAGAAGGAG 3128 >seq18381 Length=6025 Score = 95.1 bits (104), Expect = 9e-15 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||||||||||||||||||||| || || | || || || ||| | Sbjct 2072 ATGCAGATCTTTGTGAAAACTCTTACTGGGAAGACGATCACTTTAGAGGTTGAGAGCTCG 2013 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || | ||| ||||| ||| ||| ||||| ||||| | || || | Sbjct 2012 GATACTATTGATAAT--GTCAAGACAAAGATACAGGACAAGGAAGGGATCCCACCAGATC 1955 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| |||| || ||||| || || || ||||| || | |||| |||| | ||||||| Sbjct 1954 AGCAAAGGTTGATCTTTGCAGGGAAGCAGTTGGAGGATGGCCGCACCTTGGCTGATTACA 1895 Query 27968 ACATCCAAAAAGA 27980 | |||||||| || Sbjct 1894 ATATCCAAAAGGA 1882 >seq150073 Length=1124 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||||||||||||||| | ||||||||| ||| || | || || || ||| | Sbjct 57 AATGCAAATTTTTGTGAAAACCTTGACTGGGAAAACTATCACCTTAGAAGTGGAGAGCTC 116 Query 27849 CG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || | ||| ||||| ||| ||| || || ||||| | ||| || Sbjct 117 TGATACTATCGATAAT--GTCAAGACAAAGATACAGGATAAGGAAGGGATCCCGCCAGAT 174 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||| |||| || ||||| ||||| || ||||| || | |||| |||| | || || Sbjct 175 CAGCAAAGGTTGATCTTTGCAGGAAAGCAGTTGGAGGATGGCCGCACCTTGGCTGACTAT 234 Query 27967 AACATCCAAAAAGA 27980 || || ||||| || Sbjct 235 AATATTCAAAAGGA 248 >seq9871 Length=9033 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || || ||||| || || || ||||| | || ||||| ||| || Sbjct 1147 ATGCAAATCTTCGTTAAGACTCTGACCGGAAAGACAATTACTCTCGAGGTCGAGAGCTCC 1088 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| |||||| ||||| || || ||||| |||| || | Sbjct 1087 GACACAATCGACAAT--GTCAAAACCAAAATCCAAGATAAGGAAGGGATTCCCCCAGACC 1030 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| || || || || || |||||| | || |||| || | | |||| |||| Sbjct 1029 AGCAACGTTTGATCTTCGCTGGTAAACAACTCGAAGACGGCCGAACTCTCGCCGACTACA 970 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||| |||| | ||| | || | || ||||||| || Sbjct 969 ACATCCAAAAGGAGTCCACTCTCCATCTTGTCCTCCGCCTGCGTGGTGG 921 >seq20614 Length=5371 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAG--CA 27847 |||||||| ||||| || ||||||||||| || ||||| | || ||||| || || Sbjct 2319 ATGCAAATCTTTGTCAAGACTCTTACTGGCAAGACCATTACTCTAGAGGTCGAGAGTTCA 2378 Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || || ||||| |||||| || ||| ||||| ||||| | || || | Sbjct 2379 GACACCATTGACAAT--GTCAAAACTAAGATACAGGACAAGGAAGGGATCCCACCAGATC 2436 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || ||||| || || || ||||| || | |||| ||| |||| |||| Sbjct 2437 AGCAGAGGTTGATCTTTGCAGGGAAGCAGTTGGAGGATGGGCGCACTTTGGCCGACTACA 2496 Query 27968 ACATCCAAAAAGA 27980 | |||||||| || Sbjct 2497 ATATCCAAAAGGA 2509 >seq12130 Length=7920 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/233 (68%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || || ||| | || || || || || | || || || ||| || Sbjct 1419 ATGCAAATCTTCGTTAAGACTTTGACCGGTAAGACCATCACTCTCGAGGTTGAGAGCTCC 1360 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||| ||||||| |||||| ||| || |||||||| || |||| | Sbjct 1359 GAC-----ACAATCGATAATGTCAAAACAAAGATTCAAGACAAAGAGGGAATTCCCCCAG 1305 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | |||||||| || || ||||| || |||||| | || || | || | | | |||| | Sbjct 1304 ACCAGCAACGTTTGATCTTTGCTGGTAAACAACTTGAAGATGGCCGAACCCTCGCCGACT 1245 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||||||||| ||| ||| | || ||||| | ||| | ||||| ||| Sbjct 1244 ACAACATCCAAAAGGAGTCCACCCTCCACTTGGTCCTCCGTCTCCGTGGAGGC 1192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354527795896440