Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq60406 100 2e-16 seq51823 100 2e-16 seq35076 100 2e-16 seq18408 95.1 1e-14 seq9871 95.1 1e-14 seq36261 93.3 4e-14 seq12130 93.3 4e-14 seq18381 89.7 4e-13 seq5402 87.8 2e-12 seq10696 82.4 7e-11 seq6474 82.4 7e-11 >seq60406 Length=2202 Score = 100 bits (110), Expect = 2e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| || || || | ||| | ||| || || |||||| || || |||||||| Sbjct 1326 CATGCCTCCCCTCAACCGAAGCACAAGATGAAGAGTCGACTCTTTCTGAATGTTATAATC 1385 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || || ||||| | || ||||| || ||||| || || || || | ||||||||| | Sbjct 1386 AGCCAGAGTTCGGCCATCCTCAAGTTGCTTGCCTGCGAAGATCAGCCTCTGCTGGTCTGG 1445 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 || | || ||| |||||| ||||| ||||| | | | || ||| ||| Sbjct 1446 AGGAATGCCCTCCTTGTCCTGAATTTTGGTTTTGACATTGTCAATGGTGTCGGAACTCTC 1505 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 || |||| || || | || || || || ||||| |||||||||||||||| Sbjct 1506 GACCTCCAGAGTAATTGTCTTGCCAGTTAGGGTTTTCACAAAGATTTGCATCT 1558 >seq51823 Length=2487 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || ||||||||||| || || ||| ||||| || || || |||||||| || || || Sbjct 1787 CGCAACACCAAATGGAGAGTTGACTCCTTTTGAATGTTGTAGTCGGCAAGGGTGCGCCCG 1728 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || |||||||| || || ||||| || | | ||||||||| | ||| | | || ||| Sbjct 1727 TCCTCAAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGAATTCCTTCCTTG 1668 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 ||| |||||| |||| | | | |||||| ||| || || | |||||| Sbjct 1667 TCCTGGATTTTGGTCTTGACATTGTCAATGGTATCGGAACTCTCAACCTCGAGGGTGATA 1608 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || |||| || || |||||||||||||| Sbjct 1607 GTCTTGCCGGTCAAGGTCTTGACAAAGATTTGCAT 1573 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || ||| ||| ||||| || || || || || || ||||| |||| ||| Sbjct 1325 ACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCTGCGAGGGTTCGGCCGTCTTCA 1266 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 || ||||| || || || || | ||| |||||||| | ||| | | ||| ||||| | Sbjct 1265 AGTTGTTTACCAGCGAAGATCAAACGTTGCTGGTCTGGGGGAATACCCTCCTTGTCTTGG 1206 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 ||||| ||||| | | | || ||| ||| || || | ||||| | ||| Sbjct 1205 ATTTTTGTTTTGACATTGTCGATTGTGTCGGAACTCTCGACCTCAAGAGTGATTGTCTTT 1146 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 || || || || ||||| ||||||||||||| Sbjct 1145 CCGGTAAGAGTCTTAACGAAGATTTGCATCT 1115 >seq35076 Length=3390 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || | || | || | ||| || ||| ||||||||| || || ||||| || Sbjct 1847 CCTCCCCTCAGACGGAGGACAAGATGGAGAGTGGACTCTTTTTGAATGTTGTAATCAGCG 1906 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 |||||||| |||| |||||||| ||||| ||||| || || | |||||||| | || Sbjct 1907 AGTGTTCGGCCGTCCTCAAGCTGCTTGCCTGCAAAGATCAGCCTTTGCTGGTCTGGAGGA 1966 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCAC 39236 | || ||| |||||| ||| ||| |||| | | | | | | ||||| ||| || Sbjct 1967 ATGCCCTCCTTGTCC-TGAATTTTGGTTTTAACATTGTCGATTGTATCAGAACTCTCGAC 2025 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 || | || || | || || || || || || ||||||||||||||| Sbjct 2026 CTCGAGAGTAATGGTCTTGCCTGTAAGGGTCTTGACAAAGATTTGCATC 2074 >seq18408 Length=6019 Score = 95.1 bits (104), Expect = 1e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||||| ||| | || || ||| ||| || || || || || || || | |||||||| Sbjct 663 GCGTAGCACGAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCTGCTACGGTTCGTTC 722 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || ||||| || ||||| ||||||||||| || |||||||||| || | || |||||| Sbjct 723 ATCTTCAAGTTGCTTGCCGGCAAATATAAGGCGTTGCTGGTCGGGTGGGATGCCCTCTTT 782 Query 39189 GTCCATGATTTT 39200 |||| |||||| Sbjct 783 GTCCTGGATTTT 794 >seq9871 Length=9033 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || ||||||||||| ||||| ||| || || || || ||||| ||||| || || || Sbjct 477 CGCAACACCAAATGGAGCGTCGACTCCTTCTGGATGTTGTAATCAGCAAGAGTGCGACCG 536 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || ||||| || || || || ||||| | ||||||||| | ||| | | ||| ||| Sbjct 537 TCTTCGAGCTGCTTTCCAGCGAAAATAAGCCTCTGCTGGTCTGGGGGAATTCCCTCCTTG 596 Query 39190 TCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 ||| ||| || |||| ||| | | | || ||| ||| || || | ||||| Sbjct 597 TCCTGGATCTTAGTCTTGA-CGTTGTCAATGGTGTCGGAACTCTCAACCTCAAGGGTGAT 655 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | | ||||| |||| ||| || || || || ||||| Sbjct 656 AGTCTTTCCAGTCAACGTCTTGACGAAAATCTGCAT 691 >seq36261 Length=3302 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| |||| || | ||||||||| || ||| ||| || || || |||||||| ||| Sbjct 2581 CCTCCCCTTAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATGTTATAATCAGCA 2522 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || ||||| | || || ||||| ||||| ||||| || || | |||||||| | || Sbjct 2521 AGGGTTCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATCAGTCTTTGCTGGTCTGGAGGA 2462 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || ||| |||||| || || ||||| | | | || ||| ||| || Sbjct 2461 ATGCCCTCCTTGTCCTGAATCTTGGTTTTGACATTGTCAATGGTGTCGGAACTCTCAACC 2402 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 || | || || | || || || || || || || ||||||||||||| Sbjct 2401 TCGAGAGTAATGGTCTTGCCAGTTAGGGTCTTGACGAAGATTTGCATCT 2353 >seq12130 Length=7920 Score = 93.3 bits (102), Expect = 4e-14 Identities = 171/247 (69%), Gaps = 4/247 (2%) Strand=Plus/Plus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || |||||| | | || | ||||| || || ||| ||| |||| Sbjct 1178 ACGAAAATTTG--CATGCCTCCACGGAGACGGAGGACCAAGTGGAGGGTGGACTCCTTTT 1235 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | || || || ||||| || ||||| | || ||||| ||||| || ||||| || | || Sbjct 1236 GGATGTTGTAGTCGGCGAGGGTTCGGCCATCTTCAAGTTGTTTACCAGCAAAGATCAAAC 1295 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTT-GAGCGTCGCCACC 39219 | |||||||| | ||| | | ||||||||| ||| | | ||||| || | | | Sbjct 1296 GTTGCTGGTCTGGGGGAATTCCCTCTTTGTCT-TGAATCTTTGTTTTGACATTATCGATT 1354 Query 39220 GTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATT 39279 || ||| ||| || || | ||||| | || || |||| || ||||| |||||| Sbjct 1355 GTGTCGGAGCTCTCAACCTCGAGAGTGATGGTCTTACCGGTCAAAGTCTTAACGAAGATT 1414 Query 39280 TGCATCT 39286 ||||||| Sbjct 1415 TGCATCT 1421 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || ||||||||||| || || ||| || || || || ||||| || || || || || Sbjct 5535 CGCAACACCAAATGGAGTGTTGACTCCTTCTGGATGTTGTAATCAGCGAGGGTGCGGCCG 5594 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || ||||| || || ||||| ||||| | ||||||||| | ||| | | ||| || Sbjct 5595 TCCTCGAGCTGCTTTCCGGCAAAAATAAGCCTCTGCTGGTCTGGGGGAATTCCCTCCTTA 5654 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 ||| ||| || |||| | | | |||||| |||||| || | || ||| Sbjct 5655 TCCTGGATCTTGGTCTTGACATTGTCAATGGTATCGGAACTCTCCACCTCGAGGGTAATA 5714 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||| |||| || || || || || ||||| Sbjct 5715 GTCTTTCCAGTCAAAGTCTTGACGAAAATCTGCAT 5749 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || ||| ||| ||||| || || || || || || ||||| |||| || Sbjct 5997 ACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCTGCGAGAGTTCGGCCGTCTTCG 6056 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 || ||||| || || || || | ||| |||||||| | ||| | | ||||||||| || Sbjct 6057 AGTTGTTTACCAGCGAAGATCAAACGTTGCTGGTCTGGGGGAATCCCCTCTTTGTCT-TG 6115 Query 39196 ATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 | | | |||| | | | | | || ||| ||| || || | ||||| | || Sbjct 6116 AATCTTGGTTTTTACATTGTCGATTGTGTCGGAACTCTCAACCTCGAGAGTGATTGTCTT 6175 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 ||| || || || ||||| ||||||||||||| Sbjct 6176 TCCGGTAAGAGTCTTAACGAAGATTTGCATCT 6207 >seq18381 Length=6025 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| | || | ||||||||| || ||| ||| ||||| ||||| ||||| ||| Sbjct 2074 CCTCCTCTGAGACGGAGCACCAAATGGAGGGTGGACTCCTTTTGAATATTGTAATCAGCA 2133 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || ||||| | || ||||| || || || ||||| || || | |||||||| | || Sbjct 2134 AGGGTTCGGCCATCCTCAAGTTGCTTCCCAGCAAAGATCAGCCTTTGCTGGTCTGGAGGA 2193 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || || |||||| || || ||||| | | | || ||| ||| || Sbjct 2194 ATGCCTTCCTTGTCCTGAATCTTGGTTTTGACATTGTCAATGGTGTCGGAACTCTCAACC 2253 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 || | || || | || || || || || || || ||||||||||||| Sbjct 2254 TCGAGAGTAATGGTCTTGCCAGTTAGGGTCTTGACGAAGATTTGCATCT 2302 >seq5402 Length=17369 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| || || || | ||| | || || || |||||| || || |||||||| Sbjct 5703 CATGCCTCCCCTCAAACGAAGCACAAGGTGAAGGGTAGACTCTTTCTGAATGTTATAATC 5644 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 ||||| ||||| | || ||||| ||||| || ||||| || || | |||||||| | Sbjct 5643 AGCAAGAGTTCGGCCATCCTCAAGTTGTTTCCCAGCAAAGATCAGTCTTTGCTGGTCTGG 5584 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 || | || ||| || ||| || || ||||| | | | || ||| ||| Sbjct 5583 AGGAATGCCCTCCTTATCCTGAATCTTGGTTTTGACATTGTCAATGGTGTCGGAACTCTC 5524 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 || || | || || | || || || || ||||| |||||||||||||||| Sbjct 5523 GACTTCGAGAGTAATTGTCTTGCCAGTTAGGGTTTTCACAAAGATTTGCATCT 5471 >seq10696 Length=13777 Score = 82.4 bits (90), Expect = 7e-11 Identities = 143/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||| ||| || || || || |||||| | || || || | || |||||||| Sbjct 6340 ATGAAGAGTGGACTCCTTCTGGATGTTGTAATCGCCCAGAGTGCGGCCATCTTCAAGCTG 6399 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 ||| || || || || || || || || || | || | || ||||||||| |||||| Sbjct 6400 TTTTCCTGCGAAGATTAGGCGTTGTTGATCAGATGGGATGCCCTCTTTGTCGTGGATTTT 6459 Query 39201 CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||||| || | | || || || ||||| || | ||||| ||||||| || Sbjct 6460 GGATTTGAGGGTGTCGATTGTGTCTGATGATTCCACTTCAAGGGTGATTGTTTTTCCGGT 6519 Query 39261 CAGCGTTTTAACAAAGATTTGCATCTTT 39288 || |||| | ||||| ||||| ||| Sbjct 6520 TAGGTTTTTCATGAAGATCTGCATGTTT 6547 >seq6474 Length=11706 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/219 (68%), Gaps = 8/219 (4%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCG-------GCAAGTGTTCGTTC 39128 ||||| || || || ||||| || || || || || || ||||| || || | Sbjct 4477 ACCAAGTGGAGTGTACTCTCCTTCTGGATGTTGTAGTCACTAGTCAGCAAGGGTGCGGCC 4536 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTT 39187 ||| ||||||||||| || |||||||| |||||||||||||| || ||| | | ||| | Sbjct 4537 GTCTTCAAGCTGTTTTCCAGCAAATATTAGACGCTGCTGGTCTGGGGGGAATCCCCTCCT 4596 Query 39188 TGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| || ||||| | | | || || ||| || || | |||| Sbjct 4597 TGTCTTGGATCTTAGTTTTGACATTGTCGATTGTGTCAGAACTCTCGACCTCAAGAGTGA 4656 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | | ||| | || || ||||| || ||||||||||||| Sbjct 4657 TTGTCTTTTCAGTTAGAGTTTTGACGAAGATTTGCATCT 4695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427934659028360