Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq11074 84.2 2e-11 >seq11074 Length=8391 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 ||||| || | | ||| || | || | ||| |||||||| || |||||||||||||| Sbjct 707 CCGCCGCGAAGACGTAAAACAAGATGAAGAGTAGATTCTTTCTGGATATTGTAATCGGCT 648 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| |||||| | |||||| || ||| | ||||| | |||||| || || Sbjct 647 AAAGTACGACCATCTTCAAGTTGTTTACCAGCAAAGATAAGACGTTGTTGATCAGGTGGG 588 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTT 101191 | |||||||||||| || || ||| |||| | | | || |||| || | Sbjct 587 ATGCCTTCTTTGTCTTGGATCTTGGTTTTGACATTGTCGATTGTGTCTGATGATTCAACT 528 Query 101192 TCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCATTATT 101242 || | ||| || |||||||| || | ||||| | || || |||||| || Sbjct 527 TCTAGGGTTATTGTTTTGCCAGTTAGGGTTTTCACGAATATCTGCATTTTT 477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408124433739480