Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20
2015-10-23] 307,720 sequences; 665,278,925 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq2381 196 4e-45
seq33024 159 3e-34
seq80314 134 1e-26
seq100015 96.9 3e-15
>seq2381
Length=21385
Score = 196 bits (216), Expect = 4e-45
Identities = 556/845 (66%), Gaps = 12/845 (1%)
Strand=Plus/Plus
Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331
|| ||||| |||||||||||||| || |||| | ||| || ||||| ||||||||
Sbjct 13697 ACCCGCTTCTCGAAGAAATTAGTCTTCCCTTGCAGCGATATTAACTCCATCCAATCAAAC 13756
Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391
|| || || | |||||| || | || | || ||||||| | || || |||
Sbjct 13757 GGGTTCGTAACATTGTAAACCTTCCCGCATCCCAACGCACCAAGCAACCTATCCGCAACA 13816
Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACA-GGTAGCGC 4450
|| || |||||||| ||||| | || | ||| || |||| || | |||| |||| |||
Sbjct 13817 AACTCAATATACTGACTCATCAACTCCCCGTTCATCCCAACCAA-CGCACACGGTAACGC 13875
Query 4451 GTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATC 4510
|| | |||||| || || || || || | |||||| ||| | | | ||
Sbjct 13876 GTCACAAACAAACTCCCTCTCGATCTCCACCGCCTCAGAAATTATACTTTTGACTCTCTC 13935
Query 4511 TTTAGATGGTTTATTTACTAAGTATCCAA-ACAATAAACACGCAAAATCACAATGCAAAC 4569
| | | || | || | | || | | || ||||| || ||||| ||||| | |
Sbjct 13936 CTC-GCTCGTCTTCTTCTTCAATAGAGAGTATAACAAACATGCGAAATCGCAATGAAGCC 13994
Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629
||||||||| ||| | |||||||| || |||| ||| ||||||||||| | |||||
Sbjct 13995 CTTCGTCTCGAGAAATTAACTCGTTAGAGAAGGTTAGTCCAGGCATTAAACCACGCTTTT 14054
Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689
| ||||| ||||||||| || ||||| |||||||| ||||| || ||||| |
Sbjct 14055 TCAGCCAGAATATAGCGCAGAAGCTTCCAGAGAAGAATATCCCTTCAACACAAGCAAATG 14114
Query 4690 CTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAG 4749
| | || ||| | ||||| | || | ||||| ||| ||||| | ||
Sbjct 14115 CAATTATTCGCTCTGCAAACGATTCCGAACCGTGT---ATCCAGCGTAAGGCCCAATCAG 14171
Query 4750 CTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAAATG 4809
| || ||| || |||||| || | | ||| ||| | | |||||| |
Sbjct 14172 CCTTACGCTTGACAGTCGGAATCGTTTCCAGAGCACGAAAGAGACTCGACTTTTCAGCGG 14231
Query 4810 GGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAG 4869
||||||||||| || || | || || ||||||||| ||||| || ||||| ||||
Sbjct 14232 AATCTTGAATATAGGTATCAAGAAGGAGAGAATACATTTCGGAATGAATGTTTTCGATAG 14291
Query 4870 CAATCTGAAATCCGTAAAA-GCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTT 4928
|||| || || |||||||| ||| | ||||| | | ||| | || || || |
Sbjct 14292 CAATTTGGAAACCGTAAAATGCA-CGCGCTTCAGGGAGTTGGATCTCCTTGATGAAGCGG 14350
Query 4929 TCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGAT 4988
| | |||||| || ||||||||| ||| ||||| || || | || ||||
Sbjct 14351 GAAGCGAGATTTTCGAGAACAATACCGTCAGAGGCAGCAAAGAAGGCGAGCACGTGAGTG 14410
Query 4989 ATAAAGTACTGTTCGTCAGGCTTAAGTTTTT---TCCAGTGGGGCAAATCTTTAGTTAAA 5045
|| |||| | || || ||| | ||| | | |||||| | | ||| | ||
Sbjct 14411 ATGAAGTGGCGCTCATCGGGCGTGAGTGTGTCGGACCAGTGTCGGAGATCGGAGGATAGG 14470
Query 5046 TCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCA 5105
||||||||||| | ||||| || || ||||| ||||| |||||||| ||| || | |
Sbjct 14471 TCAACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCTTTCTTGTACATTTCCCAGATTTGA 14530
Query 5106 GGATA 5110
|| ||
Sbjct 14531 GGGTA 14535
>seq33024
Length=3557
Score = 159 bits (176), Expect = 3e-34
Identities = 535/826 (65%), Gaps = 10/826 (1%)
Strand=Plus/Plus
Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331
|| ||||||||||| |||||||| || || | || ||||| |||||| ||||||||
Sbjct 1044 ACCCGCTTTTCGAAAAAATTAGTCTTTCCCTGCAAAGAAATCAATTCCATCCAATCAAAC 1103
Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391
||||| | | |||| ||| || | || ||| | | ||| | ||||| |||
Sbjct 1104 GGATTCGAAACTCCGTAAACTTTCCCAATCCCTAAAGCACCCAACAACCTATCAGCAACA 1163
Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT-CTCACAGGTAGCGC 4450
||||| |||||||| ||||| | || | || || |||| || | || ||| |||||
Sbjct 1164 AATTCAATATACTGACTCATTAACTCTCCATTCATCCCAACCAACGCGCA-AGGCAGCGC 1222
Query 4451 GTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATC 4510
|| | |||||| || || || || |||| | || | || | ||
Sbjct 1223 GTCACAAACAAACTCCCTCTCGATTTCCACCGCCTCTGAAACAATCCCCTTCACGCGCTC 1282
Query 4511 TTTAGATGGTTTATTTACTAAGTATCCAA-ACAATAAACACGCAAAATCACAATGCAAAC 4569
| | | ||||| || | | | |||| ||||| || |||||||| || || |
Sbjct 1283 CTCACTCGCCTTATTGTTCAAC-AGCGAGTACAACAAACAGGCGAAATCACAGTGTAACC 1341
Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629
| ||||||| ||||| ||||| || || || | || |||||||| |||| || |
Sbjct 1342 CCTCGTCTCGAGAAATCAACTCGTTCGAGAAGGTAAGCCCCGGCATTAATCCTCGTTTCT 1401
Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689
| ||||||||||| ||| || ||||| |||||||| ||||| || || || |
Sbjct 1402 TGAGCCAAAATATCGCGCAGAAGCTTCCAGAGAAGAATATCCCTTCAACACAAGCGAAAG 1461
Query 4690 CTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAG 4749
| || | ||| ||| | || | | | | ||||| || ||||| | ||
Sbjct 1462 CGACAATTCGCTCAGCGA---AACTCTCCCCGCCGTCGATCCAGCGCAAGGCCCAATCAG 1518
Query 4750 CTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAAATG 4809
| || ||| || || || || | | ||| ||||| |||||| |
Sbjct 1519 CCTTGCGCTTGACAGCGGGGATAGTCTCAACAGCACGGAATAAACCCGATTTTTCCTCCG 1578
Query 4810 GGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAG 4869
|| | ||| ||||| || | || || | |||||||| ||||| |||||||| ||||
Sbjct 1579 AATCCTTAATGTAAGTCTCCAATAATAAGGAGTACATTTCGGAATGGATATTTTCGATAG 1638
Query 4870 CAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTT 4929
| || ||||| |||||||| ||| ||||| | | ||||||||| || || |
Sbjct 1639 CGATTTGAAACCCGTAAAATGCTCTCGCTTCAGGAAGTTGAACTTCCTTCATGAAACGAC 1698
Query 4930 CTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATA 4989
| | || || || ||||||||| || || || || || | || |||| |
Sbjct 1699 AAGCGAGATTCTCCAGCACAATACCGTCAGATGCGGCGAAGAAGGCGAGCACGTGAGTGA 1758
Query 4990 TAAAGTACTGTTCGTCAGGCTTAAGTTTTT---TCCAGTGGGGCAAATCTTTAGTTAAAT 5046
| || | |||| || | | | || | | |||||| | ||||| || |||||
Sbjct 1759 TGAAATGACGTTCATCGGACGTCAGAGTGTCGGACCAGTGACGTAAATCGGAAGATAAAT 1818
Query 5047 CAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACAT 5092
| ||||||||| ||||||| || || ||||| ||||||||||||||
Sbjct 1819 CGACTTCTTCAGCAGTCCAGAAAGAAGCTTCGGCTTTTTTGTACAT 1864
>seq80314
Length=1716
Score = 134 bits (148), Expect = 1e-26
Identities = 289/427 (68%), Gaps = 4/427 (1%)
Strand=Plus/Minus
Query 4275 CGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAACGGA 4334
|| || |||||||||||||| || |||| ||||| || ||||| ||||||||||
Sbjct 1243 CGTTTCTCGAAGAAATTAGTCTTCCCTTGCAACGATATTAACTCCATCCAATCAAACGGG 1184
Query 4335 TTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACAAAT 4394
|| || | |||||| || | || | || ||||||| | || || |||||
Sbjct 1183 TTCGTGACATTGTAAACCTTCCCGCATCCCAACGCACCAAGCAACCTATCCGCAACAAAC 1124
Query 4395 TCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACA-GGTAGCGCGTA 4453
|| |||||||| ||||| || || | ||| || |||| || | |||| |||| |||||
Sbjct 1123 TCAATATACTGACTCATCAGCTCCCCGTTCATCCCAACCAA-CGCACACGGTAACGCGTC 1065
Query 4454 TGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCTTT 4513
| |||||| || || || || || | |||||| |||| | || |
Sbjct 1064 ACAAACAAACTCCCTCTCGATCTCCACCGCCTCAGAAATTATACTCTTTACCCTCTCCTC 1005
Query 4514 AGATGGTTTATTTACTAAGTATCCAA-ACAATAAACACGCAAAATCACAATGCAAACCTT 4572
| |||| | || | | | | | || |||||||| ||||| ||||| | ||||
Sbjct 1004 -GCTGGTCTTCTTCTTCAACAGAGAGTATAACAAACACGCGAAATCGCAATGAAGCCCTT 946
Query 4573 CGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAA 4632
|||||| ||| | || ||||| || |||| ||| ||||||||||||| |||||| |
Sbjct 945 CGTCTCGAGAAATTAACTCATTAGAGAAGGTTAGTCCAGGCATTAAACCTCGCTTTTTCA 886
Query 4633 GCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTA 4692
|||| |||||||| || ||||| ||||||| ||||| || ||||| || |
Sbjct 885 GCCAGAATATAGCACATAAACTTCCAGAGAAGAATACTCCTTCAACACAAGCAAATGCAA 826
Query 4693 CTAATCG 4699
|| |||
Sbjct 825 TTATTCG 819
>seq100015
Length=1511
Score = 96.9 bits (106), Expect = 3e-15
Identities = 270/409 (66%), Gaps = 4/409 (1%)
Strand=Plus/Plus
Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331
|| ||||||||||| |||||||| || || | |||||||| |||||| ||||||||
Sbjct 952 ACCCGCTTTTCGAAAAAATTAGTCTTCCCCTGCAACGAAATCAATTCCATCCAATCAAAC 1011
Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391
||||| | | |||| ||| || | || ||| | | ||| | ||||| |||
Sbjct 1012 GGATTCGAAACTCCGTAAACTTTCCCAATCCCTAAAGCACCCAACAACCTATCAGCAACA 1071
Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT-CTCACAGGTAGCGC 4450
|| || |||||||| ||||| | || | || || |||| || | || ||| |||||
Sbjct 1072 AACTCAATATACTGACTCATCAACTCTCCATTCATCCCAACCAACGCGCA-AGGCAGCGC 1130
Query 4451 GTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATC 4510
|| | |||||| || || || || || | | || | || | ||
Sbjct 1131 GTCACAAACAAACTCCCTCTCAATTTCCACTGCCTCCGAAACAATCCCCTTCACGCGCTC 1190
Query 4511 TTTAGATGGTTTATTTACTAAGTATCCAA-ACAATAAACACGCAAAATCACAATGCAAAC 4569
| | | ||||| || | | | |||| ||||| || || ||||| || || |
Sbjct 1191 CTCACTCGCCTTATTGTTCAAC-AGCGAGTACAACAAACAGGCGAAGTCACAGTGTAATC 1249
Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629
| ||||||| ||||| ||||| || || || | || |||||||| |||| || |
Sbjct 1250 CCTCGTCTCGAGAAATCAACTCGTTCGAGAAGGTAAGCCCTGGCATTAACCCTCGTTTCT 1309
Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTAC 4678
| ||||||||||| ||| || ||||| |||||||| ||||| ||
Sbjct 1310 TGAGCCAAAATATCGCGCAGAAGCTTCCAGAGAAGAATATCCCTTCAAC 1358
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 425448019870760
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