Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2381 196 4e-45 seq33024 159 3e-34 seq80314 134 1e-26 seq100015 96.9 3e-15 >seq2381 Length=21385 Score = 196 bits (216), Expect = 4e-45 Identities = 556/845 (66%), Gaps = 12/845 (1%) Strand=Plus/Plus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 || ||||| |||||||||||||| || |||| | ||| || ||||| |||||||| Sbjct 13697 ACCCGCTTCTCGAAGAAATTAGTCTTCCCTTGCAGCGATATTAACTCCATCCAATCAAAC 13756 Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391 || || || | |||||| || | || | || ||||||| | || || ||| Sbjct 13757 GGGTTCGTAACATTGTAAACCTTCCCGCATCCCAACGCACCAAGCAACCTATCCGCAACA 13816 Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACA-GGTAGCGC 4450 || || |||||||| ||||| | || | ||| || |||| || | |||| |||| ||| Sbjct 13817 AACTCAATATACTGACTCATCAACTCCCCGTTCATCCCAACCAA-CGCACACGGTAACGC 13875 Query 4451 GTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATC 4510 || | |||||| || || || || || | |||||| ||| | | | || Sbjct 13876 GTCACAAACAAACTCCCTCTCGATCTCCACCGCCTCAGAAATTATACTTTTGACTCTCTC 13935 Query 4511 TTTAGATGGTTTATTTACTAAGTATCCAA-ACAATAAACACGCAAAATCACAATGCAAAC 4569 | | | || | || | | || | | || ||||| || ||||| ||||| | | Sbjct 13936 CTC-GCTCGTCTTCTTCTTCAATAGAGAGTATAACAAACATGCGAAATCGCAATGAAGCC 13994 Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629 ||||||||| ||| | |||||||| || |||| ||| ||||||||||| | ||||| Sbjct 13995 CTTCGTCTCGAGAAATTAACTCGTTAGAGAAGGTTAGTCCAGGCATTAAACCACGCTTTT 14054 Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689 | ||||| ||||||||| || ||||| |||||||| ||||| || ||||| | Sbjct 14055 TCAGCCAGAATATAGCGCAGAAGCTTCCAGAGAAGAATATCCCTTCAACACAAGCAAATG 14114 Query 4690 CTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAG 4749 | | || ||| | ||||| | || | ||||| ||| ||||| | || Sbjct 14115 CAATTATTCGCTCTGCAAACGATTCCGAACCGTGT---ATCCAGCGTAAGGCCCAATCAG 14171 Query 4750 CTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAAATG 4809 | || ||| || |||||| || | | ||| ||| | | |||||| | Sbjct 14172 CCTTACGCTTGACAGTCGGAATCGTTTCCAGAGCACGAAAGAGACTCGACTTTTCAGCGG 14231 Query 4810 GGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAG 4869 ||||||||||| || || | || || ||||||||| ||||| || ||||| |||| Sbjct 14232 AATCTTGAATATAGGTATCAAGAAGGAGAGAATACATTTCGGAATGAATGTTTTCGATAG 14291 Query 4870 CAATCTGAAATCCGTAAAA-GCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTT 4928 |||| || || |||||||| ||| | ||||| | | ||| | || || || | Sbjct 14292 CAATTTGGAAACCGTAAAATGCA-CGCGCTTCAGGGAGTTGGATCTCCTTGATGAAGCGG 14350 Query 4929 TCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGAT 4988 | | |||||| || ||||||||| ||| ||||| || || | || |||| Sbjct 14351 GAAGCGAGATTTTCGAGAACAATACCGTCAGAGGCAGCAAAGAAGGCGAGCACGTGAGTG 14410 Query 4989 ATAAAGTACTGTTCGTCAGGCTTAAGTTTTT---TCCAGTGGGGCAAATCTTTAGTTAAA 5045 || |||| | || || ||| | ||| | | |||||| | | ||| | || Sbjct 14411 ATGAAGTGGCGCTCATCGGGCGTGAGTGTGTCGGACCAGTGTCGGAGATCGGAGGATAGG 14470 Query 5046 TCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCA 5105 ||||||||||| | ||||| || || ||||| ||||| |||||||| ||| || | | Sbjct 14471 TCAACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCTTTCTTGTACATTTCCCAGATTTGA 14530 Query 5106 GGATA 5110 || || Sbjct 14531 GGGTA 14535 >seq33024 Length=3557 Score = 159 bits (176), Expect = 3e-34 Identities = 535/826 (65%), Gaps = 10/826 (1%) Strand=Plus/Plus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 || ||||||||||| |||||||| || || | || ||||| |||||| |||||||| Sbjct 1044 ACCCGCTTTTCGAAAAAATTAGTCTTTCCCTGCAAAGAAATCAATTCCATCCAATCAAAC 1103 Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391 ||||| | | |||| ||| || | || ||| | | ||| | ||||| ||| Sbjct 1104 GGATTCGAAACTCCGTAAACTTTCCCAATCCCTAAAGCACCCAACAACCTATCAGCAACA 1163 Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT-CTCACAGGTAGCGC 4450 ||||| |||||||| ||||| | || | || || |||| || | || ||| ||||| Sbjct 1164 AATTCAATATACTGACTCATTAACTCTCCATTCATCCCAACCAACGCGCA-AGGCAGCGC 1222 Query 4451 GTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATC 4510 || | |||||| || || || || |||| | || | || | || Sbjct 1223 GTCACAAACAAACTCCCTCTCGATTTCCACCGCCTCTGAAACAATCCCCTTCACGCGCTC 1282 Query 4511 TTTAGATGGTTTATTTACTAAGTATCCAA-ACAATAAACACGCAAAATCACAATGCAAAC 4569 | | | ||||| || | | | |||| ||||| || |||||||| || || | Sbjct 1283 CTCACTCGCCTTATTGTTCAAC-AGCGAGTACAACAAACAGGCGAAATCACAGTGTAACC 1341 Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629 | ||||||| ||||| ||||| || || || | || |||||||| |||| || | Sbjct 1342 CCTCGTCTCGAGAAATCAACTCGTTCGAGAAGGTAAGCCCCGGCATTAATCCTCGTTTCT 1401 Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689 | ||||||||||| ||| || ||||| |||||||| ||||| || || || | Sbjct 1402 TGAGCCAAAATATCGCGCAGAAGCTTCCAGAGAAGAATATCCCTTCAACACAAGCGAAAG 1461 Query 4690 CTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAG 4749 | || | ||| ||| | || | | | | ||||| || ||||| | || Sbjct 1462 CGACAATTCGCTCAGCGA---AACTCTCCCCGCCGTCGATCCAGCGCAAGGCCCAATCAG 1518 Query 4750 CTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAAATG 4809 | || ||| || || || || | | ||| ||||| |||||| | Sbjct 1519 CCTTGCGCTTGACAGCGGGGATAGTCTCAACAGCACGGAATAAACCCGATTTTTCCTCCG 1578 Query 4810 GGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAG 4869 || | ||| ||||| || | || || | |||||||| ||||| |||||||| |||| Sbjct 1579 AATCCTTAATGTAAGTCTCCAATAATAAGGAGTACATTTCGGAATGGATATTTTCGATAG 1638 Query 4870 CAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTT 4929 | || ||||| |||||||| ||| ||||| | | ||||||||| || || | Sbjct 1639 CGATTTGAAACCCGTAAAATGCTCTCGCTTCAGGAAGTTGAACTTCCTTCATGAAACGAC 1698 Query 4930 CTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATA 4989 | | || || || ||||||||| || || || || || | || |||| | Sbjct 1699 AAGCGAGATTCTCCAGCACAATACCGTCAGATGCGGCGAAGAAGGCGAGCACGTGAGTGA 1758 Query 4990 TAAAGTACTGTTCGTCAGGCTTAAGTTTTT---TCCAGTGGGGCAAATCTTTAGTTAAAT 5046 | || | |||| || | | | || | | |||||| | ||||| || ||||| Sbjct 1759 TGAAATGACGTTCATCGGACGTCAGAGTGTCGGACCAGTGACGTAAATCGGAAGATAAAT 1818 Query 5047 CAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACAT 5092 | ||||||||| ||||||| || || ||||| |||||||||||||| Sbjct 1819 CGACTTCTTCAGCAGTCCAGAAAGAAGCTTCGGCTTTTTTGTACAT 1864 >seq80314 Length=1716 Score = 134 bits (148), Expect = 1e-26 Identities = 289/427 (68%), Gaps = 4/427 (1%) Strand=Plus/Minus Query 4275 CGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAACGGA 4334 || || |||||||||||||| || |||| ||||| || ||||| |||||||||| Sbjct 1243 CGTTTCTCGAAGAAATTAGTCTTCCCTTGCAACGATATTAACTCCATCCAATCAAACGGG 1184 Query 4335 TTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACAAAT 4394 || || | |||||| || | || | || ||||||| | || || ||||| Sbjct 1183 TTCGTGACATTGTAAACCTTCCCGCATCCCAACGCACCAAGCAACCTATCCGCAACAAAC 1124 Query 4395 TCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACA-GGTAGCGCGTA 4453 || |||||||| ||||| || || | ||| || |||| || | |||| |||| ||||| Sbjct 1123 TCAATATACTGACTCATCAGCTCCCCGTTCATCCCAACCAA-CGCACACGGTAACGCGTC 1065 Query 4454 TGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCTTT 4513 | |||||| || || || || || | |||||| |||| | || | Sbjct 1064 ACAAACAAACTCCCTCTCGATCTCCACCGCCTCAGAAATTATACTCTTTACCCTCTCCTC 1005 Query 4514 AGATGGTTTATTTACTAAGTATCCAA-ACAATAAACACGCAAAATCACAATGCAAACCTT 4572 | |||| | || | | | | | || |||||||| ||||| ||||| | |||| Sbjct 1004 -GCTGGTCTTCTTCTTCAACAGAGAGTATAACAAACACGCGAAATCGCAATGAAGCCCTT 946 Query 4573 CGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAA 4632 |||||| ||| | || ||||| || |||| ||| ||||||||||||| |||||| | Sbjct 945 CGTCTCGAGAAATTAACTCATTAGAGAAGGTTAGTCCAGGCATTAAACCTCGCTTTTTCA 886 Query 4633 GCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTA 4692 |||| |||||||| || ||||| ||||||| ||||| || ||||| || | Sbjct 885 GCCAGAATATAGCACATAAACTTCCAGAGAAGAATACTCCTTCAACACAAGCAAATGCAA 826 Query 4693 CTAATCG 4699 || ||| Sbjct 825 TTATTCG 819 >seq100015 Length=1511 Score = 96.9 bits (106), Expect = 3e-15 Identities = 270/409 (66%), Gaps = 4/409 (1%) Strand=Plus/Plus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 || ||||||||||| |||||||| || || | |||||||| |||||| |||||||| Sbjct 952 ACCCGCTTTTCGAAAAAATTAGTCTTCCCCTGCAACGAAATCAATTCCATCCAATCAAAC 1011 Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391 ||||| | | |||| ||| || | || ||| | | ||| | ||||| ||| Sbjct 1012 GGATTCGAAACTCCGTAAACTTTCCCAATCCCTAAAGCACCCAACAACCTATCAGCAACA 1071 Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT-CTCACAGGTAGCGC 4450 || || |||||||| ||||| | || | || || |||| || | || ||| ||||| Sbjct 1072 AACTCAATATACTGACTCATCAACTCTCCATTCATCCCAACCAACGCGCA-AGGCAGCGC 1130 Query 4451 GTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATC 4510 || | |||||| || || || || || | | || | || | || Sbjct 1131 GTCACAAACAAACTCCCTCTCAATTTCCACTGCCTCCGAAACAATCCCCTTCACGCGCTC 1190 Query 4511 TTTAGATGGTTTATTTACTAAGTATCCAA-ACAATAAACACGCAAAATCACAATGCAAAC 4569 | | | ||||| || | | | |||| ||||| || || ||||| || || | Sbjct 1191 CTCACTCGCCTTATTGTTCAAC-AGCGAGTACAACAAACAGGCGAAGTCACAGTGTAATC 1249 Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629 | ||||||| ||||| ||||| || || || | || |||||||| |||| || | Sbjct 1250 CCTCGTCTCGAGAAATCAACTCGTTCGAGAAGGTAAGCCCTGGCATTAACCCTCGTTTCT 1309 Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTAC 4678 | ||||||||||| ||| || ||||| |||||||| ||||| || Sbjct 1310 TGAGCCAAAATATCGCGCAGAAGCTTCCAGAGAAGAATATCCCTTCAAC 1358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425448019870760