Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2381 217 2e-51 seq33024 197 2e-45 seq100015 95.1 2e-14 seq6823 87.8 2e-12 >seq2381 Length=21385 Score = 217 bits (240), Expect = 2e-51 Identities = 401/584 (69%), Gaps = 7/584 (1%) Strand=Plus/Plus Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197 |||||||| ||||| |||||||| ||||| |||| | |||||| |||||||| || || Sbjct 13970 AAACATGCGAAATCGCAATGAAGCCCTTCGTCTCGAGAAATTAACTCGTTAGAGAAGGTT 14029 Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAG 48257 || || ||||||| ||||| ||||| ||||| ||||| || ||| |||||| ||| Sbjct 14030 AGTCCAGGCATTAAACCACGCTTTTTCAGCCAGAATATAGCGCAGAAGCTTCCAGAGAAG 14089 Query 48258 AATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTT--GT 48315 ||||| ||||| || |||||||| | | || |||| | ||| | | || || Sbjct 14090 AATATCCCTTCAACACAAGCAAATGCAATTATTCGCTCTGCA-AAC-GATTCCGAACCGT 14147 Query 48316 GTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 48375 ||||||| ||| |||||||||||||| ||| ||| || || ||||| | |||| Sbjct 14148 GTATCCAGCGTAAGGCCCAATCAGCCTTACGCTTGACAGTCGGAATCGTTTCCAGAGCAC 14207 Query 48376 TAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACA 48435 ||||||| |||||| | ||||| || || ||||| | | ||| ||||| Sbjct 14208 GAAAGAGACTCGACTTTTCAGCGGAATCTTGAATATAGGTATCAAGAAGGAGAGAATACA 14267 Query 48436 TTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGA 48495 ||||||| ||||| ||||| || || || || || |||||||| | |||||| | || Sbjct 14268 TTTCGGAATGAATGTTTTCGATAGCAATTTGGAAACCGTAAAATGCACGCGCTTCAGGGA 14327 Query 48496 TCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAG 48555 || | |||| | || || ||| | ||| || || || || ||| |||| Sbjct 14328 GTTGGATCTCCTTGATGAAGCGGGAAGCGAGATTTTCGAGAACAATACCGTCAGAGGCAG 14387 Query 48556 CAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTAT---TCC 48612 |||| || || | || || | || || | || | || || ||| | | || Sbjct 14388 CAAAGAAGGCGAGCACGTGAGTGATGAAGTGGCGCTCATCGGGCGTGAGTGTGTCGGACC 14447 Query 48613 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTT 48672 ||| || ||| |||| || |||||||| || ||||| || ||||| || |||| Sbjct 14448 AGTGTCGGAGATCGGAGGATAGGTCAACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCTT 14507 Query 48673 TTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATA 48716 | || ||||| | ||| || | | ||||| ||||||||| ||| Sbjct 14508 TCTTGTACATTTCCCAGATTTGAGGGTATTTGATTGGGAACATA 14551 >seq33024 Length=3557 Score = 197 bits (218), Expect = 2e-45 Identities = 404/600 (67%), Gaps = 3/600 (1%) Strand=Plus/Plus Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197 ||||| || |||||||| || | || || |||| | ||| || ||||| || || || Sbjct 1317 AAACAGGCGAAATCACAGTGTAACCCCTCGTCTCGAGAAATCAACTCGTTCGAGAAGGTA 1376 Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAG 48257 || || ||||||| ||| ||||| |||||||||||||| || ||| |||||| ||| Sbjct 1377 AGCCCCGGCATTAATCCTCGTTTCTTGAGCCAAAATATCGCGCAGAAGCTTCCAGAGAAG 1436 Query 48258 AATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT 48317 ||||| ||||| || || || ||| || || ||| || |||| | || || Sbjct 1437 AATATCCCTTCAACACAAGCGAAAGCGACAATTCGCTCAGCGAAACTCTCCCCGCCGTCG 1496 Query 48318 ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 48377 ||||| || |||||||||||||| ||| ||| || || || || | |||| Sbjct 1497 ATCCAGCGCAAGGCCCAATCAGCCTTGCGCTTGACAGCGGGGATAGTCTCAACAGCACGG 1556 Query 48378 AAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATT 48437 || | | |||||| | ||| |||| |||||| || | ||| | |||||| Sbjct 1557 AATAAACCCGATTTTTCCTCCGAATCCTTAATGTAAGTCTCCAATAATAAGGAGTACATT 1616 Query 48438 TCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATC 48497 ||||| || |||||||| || || || ||||| |||||||| ||||||||| | | Sbjct 1617 TCGGAATGGATATTTTCGATAGCGATTTGAAACCCGTAAAATGCTCTCGCTTCAGGAAGT 1676 Query 48498 TGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCA 48557 || || ||| | || || ||| | |||||| || || || ||| || || Sbjct 1677 TGAACTTCCTTCATGAAACGACAAGCGAGATTCTCCAGCACAATACCGTCAGATGCGGCG 1736 Query 48558 AAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTAT---TCCAG 48614 || || || | || || | || |||| ||| | ||| ||||| | | |||| Sbjct 1737 AAGAAGGCGAGCACGTGAGTGATGAAATGACGTTCATCGGACGTCAGAGTGTCGGACCAG 1796 Query 48615 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTT 48674 | | | ||| |||| ||| ||||||||||| ||||| || || || || |||||| Sbjct 1797 TGACGTAAATCGGAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAAGCTTCGGCTTTT 1856 Query 48675 TTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTT 48734 || ||||| | ||| || | | ||| ||||||||| || |||| || ||| ||| Sbjct 1857 TTGTACATTTCCCAGATTTGGGGGAATTTGATTGGGAACATGCAGAATCGATCTGGGTTT 1916 >seq100015 Length=1511 Score = 95.1 bits (104), Expect = 2e-14 Identities = 163/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTG 48197 ||||| || || ||||| || | || || |||| | ||| || ||||| || || || Sbjct 1225 AAACAGGCGAAGTCACAGTGTAATCCCTCGTCTCGAGAAATCAACTCGTTCGAGAAGGTA 1284 Query 48198 AGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAG 48257 || || ||||||| || ||||| |||||||||||||| || ||| |||||| ||| Sbjct 1285 AGCCCTGGCATTAACCCTCGTTTCTTGAGCCAAAATATCGCGCAGAAGCTTCCAGAGAAG 1344 Query 48258 AATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT 48317 ||||| ||||| || || || ||| || || ||| || |||| | || | Sbjct 1345 AATATCCCTTCAACACAAGCGAAAGCGACAATTCGCTCAGCGAAACTCTCCCCGCCATCA 1404 Query 48318 ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 48374 ||||| || |||||||| ||||| ||| ||| || || || || | |||| Sbjct 1405 ATCCAGCGCAAGGCCCAATCGGCCTTGCGCTTGACAGCGGGGATAGTCTCAACAGCA 1461 >seq6823 Length=41093 Score = 87.8 bits (96), Expect = 2e-12 Identities = 168/246 (68%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 77363 ATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTA 77422 ||||||||||||||| ||||| | |||||| || ||| | || | || ||| Sbjct 35550 ATATGTTTCATAAGGGCCTTCCTTGGCAGCTAATTTGCAAGATGTTTTGAGAGCATGGTA 35609 Query 77423 ATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATA 77482 ||||||||| || || || | ||| || | | ||| || ||| |||||| || Sbjct 35610 ATAAATTGTCTCAAATATGTCCTTGTTCAACTGTTGGGCCTCAGGTGAATCAAAAGG--C 35667 Query 77483 ATG--TAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGT 77540 ||| || | ||||||| |||||||| || |||| ||||||||| || |||| |||| Sbjct 35668 ATGCCTAGTAAGATAAAGGTATCTGCTAGGCCTTGAATTCCAATACCGATTGGTCGATGT 35727 Query 77541 CTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTG 77600 ||| | || || || | || | || || || |||| | || || ||||| || Sbjct 35728 CTCATGTTTGATCTTCTTGCAGTTTCAACTGGGTAGAAATTGACATCAATTATTTTGTTC 35787 Query 77601 AGATTT 77606 |||||| Sbjct 35788 AGATTT 35793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691996756460800