Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2381 248 1e-60 seq33024 219 6e-52 seq80314 158 2e-33 seq100015 140 5e-28 seq6823 107 3e-18 >seq2381 Length=21385 Score = 248 bits (274), Expect = 1e-60 Identities = 581/873 (67%), Gaps = 9/873 (1%) Strand=Plus/Plus Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398 || || || || || || || |||||||| |||||||| || |||| || ||||| Sbjct 13682 TTCTGATACTCCCCAACCCGCTTCTCGAAGAAATTAGTCTTCCCTTGCAGCGATATTAAC 13741 Query 46399 TCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATC 46458 ||||| |||||||||| || |||||||| |||| || |||| || | || | Sbjct 13742 TCCATCCAATCAAACGGGTTCGTAACATTGTAAACCTTCCCGCATCCCAACGCACCAAGC 13801 Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 | ||||| ||||| || || |||||| |||||| || | ||||| || | | Sbjct 13802 AACCTATCCGCAACAAACTCAATATACTGACTCATCAACTCCCCGTTCATCCCAACCAAC 13861 Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC 46578 ||||| || || || |||||| || || || || || || ||||| Sbjct 13862 GCACACGGTAACGCGTCACAAACAAACTCCCTCTCGATCTCCACCGCCTCAGAAATTATA 13921 Query 46579 GATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAA 46638 | | ||| | ||||| || | | | |||| | | | |||||||| ||| Sbjct 13922 CTTTTGACTCTCTCCTCGCTCGTCTTCTTCTTCAATAGAGAGTATAACAAACATGCGAAA 13981 Query 46639 TCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATT 46698 || |||||||| ||||| |||| | |||||| |||||||| || || || ||||||||| Sbjct 13982 TCGCAATGAAGCCCTTCGTCTCGAGAAATTAACTCGTTAGAGAAGGTTAGTCCAGGCATT 14041 Query 46699 AGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCT 46758 | ||||||||||| ||||| |||||||| ||| |||||| |||||||| ||||| Sbjct 14042 AAACCACGCTTTTTCAGCCAGAATATAGCGCAGAAGCTTCCAGAGAAGAATATCCCTTCA 14101 Query 46759 ACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATC---ATTATGAATCCACCTT 46815 ||| || ||||| | | || |||| | ||| | || | || ||||| | | Sbjct 14102 ACACAAGCAAATGCAATTATTCGCTCTGC-AAAC--GATTCCGAACCGTGTATCCAGCGT 14158 Query 46816 TGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAG 46875 |||||||||||||| ||| ||| || || ||||| | |||| ||||||| Sbjct 14159 AAGGCCCAATCAGCCTTACGCTTGACAGTCGGAATCGTTTCCAGAGCACGAAAGAGACTC 14218 Query 46876 tttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGA 46935 |||||| | ||||| || ||| ||||| | | ||| ||||||||| |||||| Sbjct 14219 GACTTTTCAGCGGAATCTTGAATATAGGTATCAAGAAGGAGAGAATACATTTCGGAATGA 14278 Query 46936 ATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995 |||||||| ||||| || || || |||||||| | ||||||| | || | ||| Sbjct 14279 ATGTTTTCGATAGCAATTTGGAAACCGTAAAATGCACGCGCTTCAGGGAGTTGGATCTCC 14338 Query 46996 GTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCC 47055 | || || || | ||| || || || || ||| |||||||| || || Sbjct 14339 TTGATGAAGCGGGAAGCGAGATTTTCGAGAACAATACCGTCAGAGGCAGCAAAGAAGGCG 14398 Query 47056 AATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTAT---TCCAGTCATTGATA 47112 | || || | || || | ||||||| || ||| | | ||||| || | Sbjct 14399 AGCACGTGAGTGATGAAGTGGCGCTCATCGGGCGTGAGTGTGTCGGACCAGTGTCGGAGA 14458 Query 47113 TCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATA 47172 || |||| || |||||||| || |||||||| || || || ||||| || ||||| Sbjct 14459 TCGGAGGATAGGTCAACTTCTTCGGCGGTCCAGAAGGATGCTTCGGCTTTCTTGTACATT 14518 Query 47173 TTCCATATATCACGATATTGGATCGGAAAAATA 47205 | ||| || | | | |||| ||| || || ||| Sbjct 14519 TCCCAGATTTGAGGGTATTTGATTGGGAACATA 14551 >seq33024 Length=3557 Score = 219 bits (242), Expect = 6e-52 Identities = 592/905 (65%), Gaps = 3/905 (0%) Strand=Plus/Plus Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398 || || || || || || || || |||||||||||||| || || | ||| || || | Sbjct 1029 TTCTGATACTCCCCAACCCGCTTTTCGAAAAAATTAGTCTTTCCCTGCAAAGAAATCAAT 1088 Query 46399 TCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATC 46458 ||||| ||||||||||||| | ||| |||| ||| || ||||| | | | Sbjct 1089 TCCATCCAATCAAACGGATTCGAAACTCCGTAAACTTTCCCAATCCCTAAAGCACCCAAC 1148 Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 | ||||| ||||| ||||| |||||| |||| | || | |||||| || | | Sbjct 1149 AACCTATCAGCAACAAATTCAATATACTGACTCATTAACTCTCCATTCATCCCAACCAAC 1208 Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC 46578 | || || || || || |||||| || || || || || || | ||| Sbjct 1209 GCGCAAGGCAGCGCGTCACAAACAAACTCCCTCTCGATTTCCACCGCCTCTGAAACAATC 1268 Query 46579 GATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAA 46638 | || |||||||| | || |||| | ||| ||||| || ||| Sbjct 1269 CCCTTCACGCGCTCCTCACTCGCCTTATTGTTCAACAGCGAGTACAACAAACAGGCGAAA 1328 Query 46639 TCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATT 46698 ||||| || | || || |||| | ||| || ||||| || || || ||||| |||||| Sbjct 1329 TCACAGTGTAACCCCTCGTCTCGAGAAATCAACTCGTTCGAGAAGGTAAGCCCCGGCATT 1388 Query 46699 AGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCT 46758 | ||| || || |||||||||||||| || ||| |||||| |||||||| ||||| Sbjct 1389 AATCCTCGTTTCTTGAGCCAAAATATCGCGCAGAAGCTTCCAGAGAAGAATATCCCTTCA 1448 Query 46759 ACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAATCCACCTTTGA 46818 ||| ||||| ||||||| || ||| || |||| | | | ||||| | Sbjct 1449 ACACAAGCGAAAGCGACAATTCGCTCAGCGAAACTCTCCCCGCCGTCGATCCAGCGCAAG 1508 Query 46819 GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttt 46878 |||||||||||||| ||| ||| || || || || | |||| || | | | Sbjct 1509 GCCCAATCAGCCTTGCGCTTGACAGCGGGGATAGTCTCAACAGCACGGAATAAACCCGAT 1568 Query 46879 ttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATG 46938 ||||| || ||| |||| || || || | ||| | |||||||| ||||| || Sbjct 1569 TTTTCCTCCGAATCCTTAATGTAAGTCTCCAATAATAAGGAGTACATTTCGGAATGGATA 1628 Query 46939 TTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTA 46998 ||||| ||||| || ||||| |||||||| ||| ||||||| || || || || | Sbjct 1629 TTTTCGATAGCGATTTGAAACCCGTAAAATGCTCTCGCTTCAGGAAGTTGAACTTCCTTC 1688 Query 46999 CAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAAT 47058 || || || | |||||| ||| || || ||| || || || || || | Sbjct 1689 ATGAAACGACAAGCGAGATTCTCCAGCACAATACCGTCAGATGCGGCGAAGAAGGCGAGC 1748 Query 47059 ACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTAT---TCCAGTCATTGATATCT 47115 || || | || |||| |||||||| ||||| | | ||||| | | ||| Sbjct 1749 ACGTGAGTGATGAAATGACGTTCATCGGACGTCAGAGTGTCGGACCAGTGACGTAAATCG 1808 Query 47116 TTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTC 47175 |||| ||| ||||||||||| |||||||| || || || |||||||| ||||| | | Sbjct 1809 GAAGATAAATCGACTTCTTCAGCAGTCCAGAAAGAAGCTTCGGCTTTTTTGTACATTTCC 1868 Query 47176 CATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGTATA 47235 || || | | ||| ||| || || || |||| || ||| ||| || |||| Sbjct 1869 CAGATTTGGGGGAATTTGATTGGGAACATGCAGAATCGATCTGGGTTTGGGGCGAGTAAG 1928 Query 47236 GGTTC 47240 ||||| Sbjct 1929 GGTTC 1933 >seq80314 Length=1716 Score = 158 bits (174), Expect = 2e-33 Identities = 359/538 (67%), Gaps = 8/538 (1%) Strand=Plus/Minus Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398 || || || || || | ||||||||||| |||||||| || |||| ||| ||||| Sbjct 1261 TTCTGATACTCCCCAATCCGTTTCTCGAAGAAATTAGTCTTCCCTTGCAACGATATTAAC 1202 Query 46399 TCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATC 46458 ||||| |||||||||| || || ||||| |||| || |||| || | || | Sbjct 1201 TCCATCCAATCAAACGGGTTCGTGACATTGTAAACCTTCCCGCATCCCAACGCACCAAGC 1142 Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 | ||||| ||||| || || |||||| |||||| || | ||||| || | | Sbjct 1141 AACCTATCCGCAACAAACTCAATATACTGACTCATCAGCTCCCCGTTCATCCCAACCAAC 1082 Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC 46578 ||||| || || || |||||| || || || || || || ||||| Sbjct 1081 GCACACGGTAACGCGTCACAAACAAACTCCCTCTCGATCTCCACCGCCTCAGAAATTATA 1022 Query 46579 GATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAA 46638 |||| | ||||| || | | | |||| | | | ||||| || ||| Sbjct 1021 CTCTTTACCCTCTCCTCGCTGGTCTTCTTCTTCAACAGAGAGTATAACAAACACGCGAAA 962 Query 46639 TCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATT 46698 || |||||||| ||||| |||| | |||||| || ||||| || || || ||||||||| Sbjct 961 TCGCAATGAAGCCCTTCGTCTCGAGAAATTAACTCATTAGAGAAGGTTAGTCCAGGCATT 902 Query 46699 AGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCT 46758 | || |||||||| ||||| |||||||| ||| |||||| ||||||| ||||| Sbjct 901 AAACCTCGCTTTTTCAGCCAGAATATAGCACATAAACTTCCAGAGAAGAATACTCCTTCA 842 Query 46759 ACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTA----TGAATCCACCT 46814 ||| || ||||| | | || |||| | ||| || || | | |||||| | Sbjct 841 ACACAAGCAAATGCAATTATTCGCTCTGCA-AACA---ATTATGACCCGTCAATCCAACG 786 Query 46815 TTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 46872 | |||||||||||||| ||| ||| || || ||||||| |||| ||| ||| Sbjct 785 TAAGGCCCAATCAGCCTTACGCTTGACAGCCGGAATCGTTTCTACAGCACGAAACAGA 728 >seq100015 Length=1511 Score = 140 bits (154), Expect = 5e-28 Identities = 346/525 (66%), Gaps = 0/525 (0%) Strand=Plus/Plus Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398 || || || || || || || || |||||||||||||| || || | ||| || || | Sbjct 937 TTCTGATACTCCCCAACCCGCTTTTCGAAAAAATTAGTCTTCCCCTGCAACGAAATCAAT 996 Query 46399 TCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATC 46458 ||||| ||||||||||||| | ||| |||| ||| || ||||| | | | Sbjct 997 TCCATCCAATCAAACGGATTCGAAACTCCGTAAACTTTCCCAATCCCTAAAGCACCCAAC 1056 Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 | ||||| ||||| || || |||||| |||||| || | |||||| || | | Sbjct 1057 AACCTATCAGCAACAAACTCAATATACTGACTCATCAACTCTCCATTCATCCCAACCAAC 1116 Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC 46578 | || || || || || |||||| ||||| || || ||||| | ||| Sbjct 1117 GCGCAAGGCAGCGCGTCACAAACAAACTCCCTCTCAATTTCCACTGCCTCCGAAACAATC 1176 Query 46579 GATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAA 46638 | || |||||||| | || |||| | ||| ||||| || || Sbjct 1177 CCCTTCACGCGCTCCTCACTCGCCTTATTGTTCAACAGCGAGTACAACAAACAGGCGAAG 1236 Query 46639 TCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATT 46698 ||||| || | || || |||| | ||| || ||||| || || || ||||| |||||| Sbjct 1237 TCACAGTGTAATCCCTCGTCTCGAGAAATCAACTCGTTCGAGAAGGTAAGCCCTGGCATT 1296 Query 46699 AGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCT 46758 | || || || |||||||||||||| || ||| |||||| |||||||| ||||| Sbjct 1297 AACCCTCGTTTCTTGAGCCAAAATATCGCGCAGAAGCTTCCAGAGAAGAATATCCCTTCA 1356 Query 46759 ACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAATCCACCTTTGA 46818 ||| ||||| ||||||| || ||| || |||| | | || |||||| | Sbjct 1357 ACACAAGCGAAAGCGACAATTCGCTCAGCGAAACTCTCCCCGCCATCAATCCAGCGCAAG 1416 Query 46819 GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCA 46863 |||||||| ||||| ||| ||| || || || || | |||| Sbjct 1417 GCCCAATCGGCCTTGCGCTTGACAGCGGGGATAGTCTCAACAGCA 1461 >seq6823 Length=41093 Score = 107 bits (118), Expect = 3e-18 Identities = 187/269 (70%), Gaps = 10/269 (4%) Strand=Plus/Plus Query 75958 ATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTA 76017 ||||||||| |||| || ||||| |||||| || |||| | | | ||| ||| Sbjct 35550 ATATGTTTCATAAGGGCCTTCCTTGGCAGCTAATTTGCAAGATGTTTTGAGAGCATGGTA 35609 Query 76018 ATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATA 76077 ||||||||| || || || | ||| || | | ||| || ||| | ||||||||| Sbjct 35610 ATAAATTGTCTCAAATATGTCCTTGTTCAACTGTTGGGCCTCAGGTGAATCAAAAGG--C 35667 Query 76078 ATG--TAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGT 76135 ||| || | ||||| | ||||||||| || |||| ||||||||| || |||| |||| Sbjct 35668 ATGCCTAGTAAGATAAAGGTATCTGCTAGGCCTTGAATTCCAATACCGATTGGTCGATGT 35727 Query 76136 CTCTTATTGGA---AATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTA 76192 ||| | || || || ||| ||| || ||||| |||| | ||| || ||||| Sbjct 35728 CTCATGTTTGATCTTCTTGCAGTTTC---AACTGGGTAGAAATTGACATCAATTATTTTG 35784 Query 76193 TTGAGATTTCTGACAACTACTTTAACCAC 76221 || |||||| || ||||| | ||| || Sbjct 35785 TTCAGATTTGTGGTGACTACCTCAACAAC 35813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 710192097830400