Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq1 664 0.0 seq9259 86.0 7e-12 >seq1 Length=146306 Score = 664 bits (736), Expect = 0.0 Identities = 747/994 (75%), Gaps = 4/994 (0%) Strand=Plus/Plus Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987 |||||||||||| |||| ||||| || || | || |||| ||||| || || || Sbjct 87867 TTCTGTAACTGGATAACCAGCACCGAAAACCGCCTTTACATCGGGTGGTTTGGTGTTTTG 87926 Query 163988 ATGATTCCCTGCCTGCTGG-CAGCGACTACATGT-TTCATCATCGCCTTCATCGGTGCTC 164045 ||||| |||| | | | | | || ||| | ||| || || || |||||||| | ||||| Sbjct 87927 ATGAT-CCCTACATTATTGACTGCAACTTC-TGTATTTATTATAGCCTTCATTGCTGCTC 87984 Query 164046 CTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACA 164105 |||| || || || ||||| || || ||||| || |||| || || | || ||||||| Sbjct 87985 CTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACA 88044 Query 164106 ACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCA 164165 | || || |||||||| |||| ||| ||||| ||||| || ||||||| || || | Sbjct 88045 ATATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAA 88104 Query 164166 TCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTG 164225 | |||||||||||| | | || || ||| | ||||| |||||||||| | || ||| Sbjct 88105 TATGGGAAGCAGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTG 88164 Query 164226 TGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACC 164285 | | |||||| | |||| | | ||| ||||||||||||||||||||| || || Sbjct 88165 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 88224 Query 164286 GTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTG 164345 |||| |||||||||||||||||| || ||||| || ||||| || || || || | || Sbjct 88225 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCGGTTGCGGCGGCTACTG 88284 Query 164346 CAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCA 164405 | || ||| || |||| || |||||||||| ||| ||||||| |||||||| || | Sbjct 88285 CGGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 88344 Query 164406 TCTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACC 164465 | ||||| || ||||||| |||| | || ||||||||||||||||||||||| ||||||| Sbjct 88345 TTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 88404 Query 164466 CCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACG 164525 | || || ||| | || ||||| ||||| || ||||| || || || ||||| ||||| | Sbjct 88405 CATTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATG 88464 Query 164526 GTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTATG 164585 |||| |||| |||||| || | | || ||||| |||||||| || || | | Sbjct 88465 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 88524 Query 164586 GTTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTTG 164645 |||||| || ||||| || |||||||| || || ||||| || ||||| ||||| |||| Sbjct 88525 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTG 88584 Query 164646 GTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCG 164705 |||| | || |||||||| ||| ||||| || || ||||| | ||||||||| | | Sbjct 88585 GTCGATTAATCTTCCAATATGCTAGTTTCAATAATTCTCGTTCTTTACACTTCTTCTTAG 88644 Query 164706 CAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTCA 164765 | || ||||| || || ||||| |||||||||||| | || ||||||| ||||| |||| Sbjct 88645 CTGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCGTTCA 88704 Query 164766 ACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACA 164825 || | || |||||||| |||||||| || | | ||| |||| |||||||| | || | Sbjct 88705 ACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATA 88764 Query 164826 CCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATG 164885 | ||||| || | | ||||||||| || || |||||||| ||||| || ||||||| Sbjct 88765 CTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 88824 Query 164886 CTCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 164919 |||| ||||||||||| ||| | ||||||| ||| Sbjct 88825 CTCATAACTTCCCTCTAGACTTAGCTGCTGTTGA 88858 Score = 585 bits (648), Expect = 3e-162 Identities = 748/1024 (73%), Gaps = 6/1024 (1%) Strand=Plus/Minus Query 165149 TTGGTTCGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTC 165208 || ||| ||| | | || |||||| | |||||||||||||||||||| || ||||| Sbjct 58155 TTTGTTTGATATTATGGATGACTGGTTACGTAGAGACCGTTTCGTTTTTGTAGGTTGGTC 58096 Query 165209 TGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTAC 165268 ||| || | || ||||| ||||||| | ||| | ||||||||| |||| || || || Sbjct 58095 TGGTCTATTGCTCTTTCCTTGTGCTTATTTCGCTGTAGGGGGTTGGTTTACGGGTACGAC 58036 Query 165269 TTTCGTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGG-TGCAAACT 165327 || || ||| |||||||| || || | || ||||||||| | || || ||||| | Sbjct 58035 GTTTGTAACGTCATGGTATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGCAA--T 57978 Query 165328 TTCTTA-CTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTA 165386 |||||| | || || ||||||||||| || | | | | || ||| | || | || Sbjct 57977 TTCTTAACCGCAGCCGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTGCTG 57918 Query 165387 TGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACT 165446 ||||||||||| | ||||| || || | || ||||| ||| | || || || |||||| Sbjct 57917 TGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACT 57858 Query 165447 TTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTG 165506 ||||| || || || || || || | ||| |||||||| ||| | ||||| || ||||| Sbjct 57857 TTTGTTGCTCTTCATGGCGCTTTCGGACTAATAGGTTTTATGTTACGCCAATTCGAACTT 57798 Query 165507 GCACGA-CTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGT 165565 || ||| || || | | || ||||| ||||| || || |||||||| || |||||||| Sbjct 57797 GCTCGATCTGTTCAAT-TGCGCCCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGT 57739 Query 165566 ATTCGTTAGTGTTTTTCTTATGTATCCTCTGGGACAATCGTCCTGGTTCTTCGCACCGTC 165625 || ||| ||| || || || ||||| || || || || |||||||| || || Sbjct 57738 TTTTGTTTCTGTATTCCTAATTTATCCACTAGGCCAGTCTGGTTGGTTCTTTGCGCCTAG 57679 Query 165626 GTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGAC 165685 || || || ||||| || ||||||||| | ||||| | |||||||| ||||| ||||| Sbjct 57678 TTTTGGTGTAGCAGCCATATTCCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGAC 57619 Query 165686 GCTGAATCCCTTTCACATGATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTTTCTGC 165745 |||||| || ||||| |||||||| || || ||| | || |||| || |||| | ||| Sbjct 57618 GCTGAACCCTTTTCATATGATGGGGGTTGCTGGTGTATTGGGCGCCGCTCTGCTATGTGC 57559 Query 165746 CATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACTTT 165805 |||||||||| ||| ||||| |||||||| | |||||||||||| ||||| || || Sbjct 57558 TATTCATGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGGGCAAATACATT 57499 Query 165806 CAAAGCATTTGATAGTACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGTTT 165865 | || ||| | || || | |||||||||||||| |||||||| ||||||||||| Sbjct 57498 CCGGGCTTTTAACCCAACCCAAGCTGAGGAAACTTATTCAATGGTCACCGCTAACCGTTT 57439 Query 165866 CTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGCTTCACTTCTTTATGCT 165925 ||||| || || ||||| ||||||| |||||| |||||| | || ||||||||| | Sbjct 57438 TTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTT 57379 Query 165926 CTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATTGGTCTCGCACTCAA 165985 ||||| || || | || | |||| ||| || |||| | | ||||| || | || Sbjct 57378 ATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCCTTGAA 57319 Query 165986 TCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCTGCTGAGGATCCAGAGTTTGA 166045 || ||||| ||||| || || || ||||| || | || || || ||||| || ||||| Sbjct 57318 CCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCCGAAGATCCTGAATTTGA 57259 Query 166046 AACGTTCTATACGAAAAACATCCTCCTTAATGAAGGACTCCGTGCCTGGTTGGCTCCTGT 166105 || ||||| || ||||| || ||| | || ||||| | ||||| ||| |||| || Sbjct 57258 GACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCA 57199 Query 166106 AGACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAAGTCTTGCCAAGAGGCAACGCACT 166165 ||| || |||||||| ||| || | |||||||| || || | || | || ||||| || Sbjct 57198 AGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 57139 Query 166166 TTAA 166169 |||| Sbjct 57138 TTAA 57135 >seq9259 Length=9423 Score = 86.0 bits (94), Expect = 7e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 161546 GACGACCAGTACATTCTTGACGCAGCTGAGGAAGCGGGTGTGGACATCAACTACTCGTGT 161605 || ||| |||| | |||||| |||||||| | ||| | ||| | ||||||||| Sbjct 3859 GATGACGTGTACGTGCTTGACCAGGCTGAGGAGGAGGGAATTGACCTACCATACTCGTGT 3918 Query 161606 CGTGCAGGCGCTTGTTCGTCGTGCGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGC 161665 || || || | || || ||||| || || || | || | || | ||| ||||| Sbjct 3919 CGGGCGGGGTCATGCTCTTCGTGTGCTGGTAAGGTGGTTGCCGGTAGCGTTGACCAGTCA 3978 Query 161666 GACCAGTCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCT 161725 |||||| ||||| || |||||||| || || |||||| |||||||||||| || Sbjct 3979 GACCAGAGTTTCCTTGATGATGACCAGATTGAAGCTGGTTGGGTTCTGACTTGTGCCGCT 4038 Query 161726 TATCCCACGAGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGAACT 161772 || || | ||| | ||||||||| | || || |||||||| Sbjct 4039 TACCCGTCTGCTGATGTTACCATTGAGACTCACAAGGAGGAGGAACT 4085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555509382350400