Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq1 666 0.0 >seq1 Length=146306 Score = 666 bits (738), Expect = 0.0 Identities = 748/995 (75%), Gaps = 4/995 (0%) Strand=Plus/Plus Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657 |||||||||||| ||||| |||| | || || || || |||| ||||| ||||| || Sbjct 87867 TTCTGTAACTGGATAACCAGCACCGAAAACCGCCTTTACATCGGGTGGTTTGGTGTTTTG 87926 Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGTCGCTGCTCC 177716 ||||||||||| | | |||| || ||||| || || | || ||| | |||||||| Sbjct 87927 ATGATCCCTACATTATTGACTGCAACT-TCTGTATTTATTATAGCCTTCATTGCTGCTCC 87985 Query 177717 TCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAA 177776 ||| || || || || || || |||||||| || |||| || || | || || ||||| Sbjct 87986 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAA 88045 Query 177777 CATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCAT 177836 || ||||||||||| || ||||| ||||| ||||| || | ||||| ||||| || Sbjct 88046 TATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAAT 88105 Query 177837 CTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTCGTTAT 177896 ||||||||||| ||| | ||||||||| | |||||||||||||||| | || || | Sbjct 88106 ATGGGAAGCAGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 88165 Query 177897 CTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACTTTCTTACCG 177956 | |||||| | | ||| | | || ||||||||||||||||||||| || ||| Sbjct 88166 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 88225 Query 177957 CCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATCTGC 178016 || ||||||||||| ||||| ||| ||||| || ||||| || || || || |||| Sbjct 88226 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCGGTTGCGGCGGCTACTGC 88285 Query 178017 TGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTAT 178076 || ||| | | || || |||||||||| ||| ||||| | |||||| || || || Sbjct 88286 GGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 88345 Query 178077 CAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCC 178136 ||| || ||||||| |||| |||| ||||| || |||||||||||||| |||||||| Sbjct 88346 TTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 88405 Query 178137 CTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACGG 178196 || ||||||||||| || |||||||| || || || || || || ||||| ||||| || Sbjct 88406 ATTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGG 88465 Query 178197 TTCTCTGGTTACTTCCTCGCTGGTTC-GTGAAACCACCGAGAACGAAAGTCAGAACTATG 178255 ||| |||| |||| || | | | || | |||||||| || || ||| | || | | Sbjct 88466 TTCCTTGGTAACTT-CTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 88524 Query 178256 GTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTTCG 178315 |||||| ||||||||||| ||||| || || || ||||| |||||||||||||| || | Sbjct 88525 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTG 88584 Query 178316 GTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCG 178375 |||| | ||||||||||| || ||||| || || ||||| | ||||||||| | | Sbjct 88585 GTCGATTAATCTTCCAATATGCTAGTTTCAATAATTCTCGTTCTTTACACTTCTTCTTAG 88644 Query 178376 CAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCA 178435 | || ||||| || || ||||| ||||| |||||| | ||| ||||||| ||||| |||| Sbjct 88645 CTGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCGTTCA 88704 Query 178436 ACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTGAACA 178495 || | || |||||||| |||||||| || | | |||||||| || || | || | Sbjct 88705 ACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATA 88764 Query 178496 CCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAATG 178555 | ||||| || | | ||||||||| |||||||||||||| ||||| || ||||||| Sbjct 88765 CTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 88824 Query 178556 CTCACAACTTCCCTCTTGACCTCGCTGCTGCTGAA 178590 |||| ||||||||||| ||| | ||||||| |||| Sbjct 88825 CTCATAACTTCCCTCTAGACTTAGCTGCTGTTGAA 88859 Score = 565 bits (626), Expect = 3e-156 Identities = 738/1016 (73%), Gaps = 4/1016 (0%) Strand=Plus/Minus Query 178838 GTTTGATGTACTCGATGACTGGCTTAAGC-GTGATCGGTTCGTTTTTGTTGGTTGGTCAG 178896 ||||||| | | ||||||||| ||| | | || || ||||||||||| |||||||| | Sbjct 58152 GTTTGATATTATGGATGACTGG-TTACGTAGAGACCGTTTCGTTTTTGTAGGTTGGTCTG 58094 Query 178897 GTCTTCTTCTGTTCCCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGGGCACAACAT 178956 |||| | || || ||| |||||| | || | || |||||| | ||||| || || | Sbjct 58093 GTCTATTGCTCTTTCCTTGTGCTTATTTCGCTGTAGGGGGTTGGTTTACGGGTACGACGT 58034 Query 178957 TCGTCACCTCGTGGTATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTAATTTCC 179016 | || || || |||||||| || ||| | || ||| ||| | || || || |||||| Sbjct 58033 TTGTAACGTCATGGTATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGCAATTTCT 57974 Query 179017 TTACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTCTTCTATGGG 179076 | || || || || || ||||||||| | | | | ||| || | | | || |||| Sbjct 57973 TAACCGCAGCCGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTGCTGTGGG 57914 Query 179077 GTCCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGGCCTTTTG 179136 |||| ||||| || |||||||| || ||| ||| | || || || ||| |||||| Sbjct 57913 GTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTTG 57854 Query 179137 TGGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCGCAC 179196 | || || || || || |||| || |||||||| ||| | || || || ||| | || | Sbjct 57853 TTGCTCTTCATGGCGCTTTCGGACTAATAGGTTTTATGTTACGCCAATTCGAACTTGCTC 57794 Query 179197 G-TCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCTGTCTTT 179255 | ||| || | | || ||||| ||||||||||| || ||||| ||||||||||| ||| Sbjct 57793 GATCTGTTCAAT-TGCGCCCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTTTTT 57735 Query 179256 GTGTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCGTTT 179315 || ||||| || || || ||||| || || ||||| |||||||||||||| ||| Sbjct 57734 GTTTCTGTATTCCTAATTTATCCACTAGGCCAGTCTGGTTGGTTCTTTGCGCCTAGTTTT 57675 Query 179316 GGAGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGACGCTC 179375 || || ||||| || ||||| ||| | ||||| | || || || || || |||||||| Sbjct 57674 GGTGTAGCAGCCATATTCCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACGCTG 57615 Query 179376 AACCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCCATT 179435 ||||| || || |||||||| || || ||| | |||||| || |||| ||||| ||| Sbjct 57614 AACCCTTTTCATATGATGGGGGTTGCTGGTGTATTGGGCGCCGCTCTGCTATGTGCTATT 57555 Query 179436 CATGGTGCTACAGTAGAGAACACACTCTTTGAAGACAGTGACCAATCAAATACATTCAAG 179495 ||||||||||| ||||| || || | |||||||| |||| ||||||||||| | Sbjct 57554 CATGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGGGCAAATACATTCCGG 57495 Query 179496 GCATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGG 179555 || || | || || |||| ||||| || ||||| ||||| || || |||||||| ||| Sbjct 57494 GCTTTTAACCCAACCCAAGCTGAGGAAACTTATTCAATGGTCACCGCTAACCGTTTTTGG 57435 Query 179556 TCTCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTGTTT 179615 || || |||||||| | || || |||||| |||||| |||||||||||||||| ||| Sbjct 57434 TCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 57375 Query 179616 GTTCCTGTCATGGGTCTTTGGACCTCTAGCATTGGTATTATTGGTCTTGCACTTAACCTT 179675 || || || | ||| | |||| | |||| | | ||||| || | ||||| Sbjct 57374 GTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCCTTGAACCTA 57315 Query 179676 AGAGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGAGACG 179735 | || |||||||| ||||| || || ||| | || || || |||||||| || ||||| Sbjct 57314 CGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCCGAAGATCCTGAATTTGAGACT 57255 Query 179736 TTCTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACCAGTCGAT 179795 ||||| ||||| || || || || || |||||| | |||||||||||||| | ||| Sbjct 57254 TTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGAT 57195 Query 179796 CAACCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 179851 || || ||||||||| || |||| ||||| || || | || | || |||||||| Sbjct 57194 CAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 57139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594013504355200