Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq1 612 2e-170 >seq1 Length=146306 Score = 612 bits (678), Expect = 2e-170 Identities = 731/992 (74%), Gaps = 0/992 (0%) Strand=Plus/Plus Query 169352 TTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTG 169411 |||||||||||| ||||| ||| || ||||| || || |||| ||||| || || || Sbjct 87867 TTCTGTAACTGGATAACCAGCACCGAAAACCGCCTTTACATCGGGTGGTTTGGTGTTTTG 87926 Query 169412 ATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCC 169471 |||||||| | || | ||||| || || || || |||||||| | |||||| Sbjct 87927 ATGATCCCTACATTATTGACTGCAACTTCTGTATTTATTATAGCCTTCATTGCTGCTCCT 87986 Query 169472 CCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAAC 169531 || || || || || || || || ||||| ||| |||| ||||| | || || ||||| Sbjct 87987 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTACGGAAACAAT 88046 Query 169532 ATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCATC 169591 || || |||||||| || | || |||| || || || | ||||| ||||| || Sbjct 88047 ATTATTTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATA 88106 Query 169592 TGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCAACTGGTTGTC 169651 |||||||||||| | | ||||| ||||| ||||| |||||||||| | || |||| Sbjct 88107 TGGGAAGCAGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTT 88166 Query 169652 TTCCACTTCCTCATCGGCATCTATGCTTACATGGGTCGTGAGTGGGAATTGTCCTATCGT 169711 | |||||| | | || | | ||| |||||||||||||||||| | | ||| Sbjct 88167 CTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 88226 Query 169712 CTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCT 169771 ||||||||||| |||||||| |||||| || || ||||| |||||||| || | || Sbjct 88227 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCGGTTGCGGCGGCTACTGCG 88286 Query 169772 GTTTTCCTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTATC 169831 |||||| || ||||||| | || ||||| || ||||| | ||||||||| || || Sbjct 88287 GTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATT 88346 Query 169832 TCGGGAACCTTTAACTACATGCTGGTCTTCCAAGCTGAGCACAACATCCTCATGCACCCC 169891 || || || || |||| |||| | || ||||| ||||||||||||||||| |||||||| Sbjct 88347 TCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCA 88406 Query 169892 TTCCACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTTTAGCGCGATGCACGGT 169951 || |||||| | ||||| || || || || || || || || ||||| || ||||| ||| Sbjct 88407 TTTCACATGTTGGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTTAGTGCTATGCATGGT 88466 Query 169952 AGCCTCGTCACTTCGAGTCTTGTCCGTGAAACCACCGAGAACGAGTCCCAGAACTATGGT 170011 | | || ||||| ||| | || | |||||||| || || || || || | ||| Sbjct 88467 TCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 88526 Query 170012 TACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCTCACGGTTACTTCGGT 170071 |||| ||||||||||| ||||| || || || ||||| || ||||| ||||| || ||| Sbjct 88527 TACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGT 88586 Query 170072 CGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACTGCACTTCTTCCTCGCA 170131 || | ||||||||||| ||| ||||| || || ||||| | ||||||||| | || Sbjct 88587 CGATTAATCTTCCAATATGCTAGTTTCAATAATTCTCGTTCTTTACACTTCTTCTTAGCT 88646 Query 170132 GCATGGCCTGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCACGATGGCGTTCAAC 170191 || ||||| || || || || ||||| || ||| | ||| | ||| |||||||||||| Sbjct 88647 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGCACTATGGCGTTCAAC 88706 Query 170192 CTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACC 170251 | || |||||||| |||||||| || | | ||| |||| |||||||| | || || Sbjct 88707 TTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACT 88766 Query 170252 TGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCT 170311 ||||| || | | ||||||||| ||||| |||||||| ||||| || ||||||||| Sbjct 88767 TGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 88826 Query 170312 CACAACTTCCCTCTCGACCTCGCTGCTGCTGA 170343 || ||||||||||| ||| | ||||||| ||| Sbjct 88827 CATAACTTCCCTCTAGACTTAGCTGCTGTTGA 88858 Score = 544 bits (602), Expect = 1e-149 Identities = 739/1024 (72%), Gaps = 10/1024 (1%) Strand=Plus/Minus Query 170594 GTTCGATGTCCTGGATGACTGGCTTAAACGT---GATCGGTTTGTATTTGTGGGCTGGTC 170650 ||| ||| | ||||||||||| | |||| || || || || ||||| || ||||| Sbjct 58152 GTTTGATATTATGGATGACTGGTT---ACGTAGAGACCGTTTCGTTTTTGTAGGTTGGTC 58096 Query 170651 TGGACTTCTTCTTTTTCCCACTGCTTATCTTGCAATTGGCGGCTGGCTTACGGGCACGAC 170710 ||| || | || ||||| ||||||| | || | || || ||| ||||||| ||||| Sbjct 58095 TGGTCTATTGCTCTTTCCTTGTGCTTATTTCGCTGTAGGGGGTTGGTTTACGGGTACGAC 58036 Query 170711 ATTTGTTACAAGTTGGTACACCCACGGACTTGCAAGTTCGTACCTTGAAGG-TGCTAATT 170769 ||||| || ||||| ||||| || | || ||||| || | ||||| ||| |||| Sbjct 58035 GTTTGTAACGTCATGGTATACCCATGGGTTGGCCAGTTCCTATTTGGAAGGCTGC-AATT 57977 Query 170770 TCCTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTT 170829 || | || || || || || || |||||| || | | | || ||| | | | || | Sbjct 57976 TCTTAACCGCAGCCGTTTCTACTCCTGCTAATAGTTTAGCACACTCTTTGTTGTTGCTGT 57917 Query 170830 GGGGTCCTGAGTCTCAGGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAATT 170889 |||||||||| | || || ||||| || |||| ||| | || || || |||| || Sbjct 57916 GGGGTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTT 57857 Query 170890 TTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCA 170949 |||| || || || || || || | || |||||||| ||| | || || || ||| | Sbjct 57856 TTGTTGCTCTTCATGGCGCTTTCGGACTAATAGGTTTTATGTTACGCCAATTCGAACTTG 57797 Query 170950 GTCG-TCTCGTAGGGATTAGACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTG 171008 ||| ||| || | | || || ||||||||||| |||||||| || || ||||| Sbjct 57796 CTCGATCT-GTTCAATTGCGCCCTTATAATGCAATCGCATTCTCTGGCCCAATTGCTGTT 57738 Query 171009 TTTGTCAGCGTGTTCCTCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCC 171068 ||||| || ||||| || ||||| || || ||||| |||||||||| || ||| Sbjct 57737 TTTGTTTCTGTATTCCTAATTTATCCACTAGGCCAGTCTGGTTGGTTCTTTGCGCCTAGT 57678 Query 171069 TTTGGAGTTGCAGCAATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACA 171128 ||||| || ||||| || ||||| ||| | ||||| | ||||| || || || ||||| Sbjct 57677 TTTGGTGTAGCAGCCATATTCCGATTCATCCTCTTTTTTCAAGGGTTTCATAATTGGACG 57618 Query 171129 CTGAATCCATTTCATATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCA 171188 ||||| || |||||||||||||| ||||| ||| | | |||| || |||| | ||| Sbjct 57617 CTGAACCCTTTTCATATGATGGGGGTTGCTGGTGTATTGGGCGCCGCTCTGCTATGTGCT 57558 Query 171189 ATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCTTT 171248 |||||||||| ||| ||||| |||||||| | ||||||||||||| ||||| || || Sbjct 57557 ATTCATGGTGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGGGCAAATACATTC 57498 Query 171249 AAGGCATTTGACACGACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTTC 171308 ||| ||| || | || || | || || || ||||| |||||||| ||||| ||||| Sbjct 57497 CGGGCTTTTAACCCAACCCAAGCTGAGGAAACTTATTCAATGGTCACCGCTAACCGTTTT 57438 Query 171309 TGGTCGCAGATTTTTGGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTG 171368 ||||| || || ||||| | || || |||||| |||||||| |||||||||||| | Sbjct 57437 TGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTA 57378 Query 171369 TTTGTTCCTGTCATGGGTCTTTGGGTCAGTAGTCTGGGGATTATTGGTCTTGCTCTTAAT 171428 ||||| || || | ||| | ||| | ||| ||| ||| | | ||||| || | || Sbjct 57377 TTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGGGTAGTCGGTCTGGCCTTGAAC 57318 Query 171429 CTTAGGGCTTATGATTTCGTAAGTCAGGAGGTCAGAGCAGCAGAAGATCCAGAGTTCGAG 171488 || | || ||||| ||||| ||||| || | ||||| |||||||| || || ||| Sbjct 57317 CTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCCGAAGATCCTGAATTTGAG 57258 Query 171489 ACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTTCGTGCATGGATGGCACCAGTA 171548 || ||||| ||||| || || || || || |||||| ||||||| |||||||| | | Sbjct 57257 ACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAA 57198 Query 171549 GACCAACCACATGAAAACTTTGTGTTCCCAGAGGAAGTTCTACCTCGTGGCAATGCACTT 171608 || || || ||||||||| || | ||||| ||||| |||||||| ||||| || || ||| Sbjct 57197 GATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTT 57138 Query 171609 TGAT 171612 | || Sbjct 57137 TAAT 57134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589920508854400