Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silene_20latifolia_20subsp._20alba_20[genbank_20GCA_5F001412135.1_20 2015-10-23] 307,720 sequences; 665,278,925 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq2381 132 5e-26 seq33024 107 2e-18 seq100015 87.8 2e-12 >seq2381 Length=21385 Score = 132 bits (146), Expect = 5e-26 Identities = 296/441 (67%), Gaps = 5/441 (1%) Strand=Plus/Plus Query 23503 AATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAAT 23562 || |||||||| ||||| ||||| || ||||| || | | ||| || || ||||| || Sbjct 13967 AACAAACATGCGAAATCGCAATGAAGCCCTTCGTCTCGAGAAATTAACTCGTTAGAGAAG 14026 Query 23563 GTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGAT-CCGGA 23621 |||| ||| |||||||| || || ||||| | ||| ||||| || ||| | | | || || Sbjct 14027 GTTAGTCCAGGCATTAAACCACGCTTTTTCAGCCAGAATATAGC-GCAGAAGCTTCCAGA 14085 Query 23622 AAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATA 23681 ||||| || || |||||| ||||| || | | || |||| | | | | Sbjct 14086 GAAGAATATCCCTTCAACACAAGCAAATGCAATTATTCGCTCTGCAAACGATTCCG---A 14142 Query 23682 ATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAAT 23741 | | ||||| | | ||||| |||||| || ||| | ||| ||||| | Sbjct 14143 ACCGTGTATCCAGCGTAAGGCCCAATCAGCCTTACGCTTGACAGTCGGAATCGTTTCCAG 14202 Query 23742 TGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACT 23801 || |||||| | ||||| | |||| ||||| ||||||| || | | Sbjct 14203 AGCACGAAAGAGACTCGACTTTTCAGCGGAATCTTGAATATAGGTATCAAGAAGGAGAGA 14262 Query 23802 ATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTC 23861 ||||||||| |||||||| ||||| |||||||| || || || ||||| | ||||| Sbjct 14263 ATACATTTCGGAATGAATGTTTTCGATAGCAATTTGGAAACCGTAAAATGCACGCGCTTC 14322 Query 23862 AGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACT 23921 || | ||| | || || | || | ||| | ||||||| ||||||||| ||| Sbjct 14323 AGGGAGTTGGATCTCCTTGATGAAGCGGGAAGCGAGATTTTCGAGAACAATACCGTCAGA 14382 Query 23922 AGCAGCAAAGAAAGCAAGAAC 23942 ||||||||||| || || || Sbjct 14383 GGCAGCAAAGAAGGCGAGCAC 14403 >seq33024 Length=3557 Score = 107 bits (118), Expect = 2e-18 Identities = 306/467 (66%), Gaps = 5/467 (1%) Strand=Plus/Plus Query 23501 ACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAA 23560 |||| ||||| || |||||||| |||| || || || | | |||||| || || || | Sbjct 1312 ACAACAAACAGGCGAAATCACAGTGTAACCCCTCGTCTCGAGAAATCAACTCGTTCGAGA 1371 Query 23561 ATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCA-AATGATCCG 23619 | || | || ||||||||||||||||| || | ||||||||| || ||| || ||| Sbjct 1372 AGGTAAGCCCCGGCATTAATCCTCGTTTCTTGAGCCAAAATATCGC-GCAGAAGCTTCCA 1430 Query 23620 GAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTA 23679 || ||||| || || |||||| || || || |||| || | | || | | Sbjct 1431 GAGAAGAATATCCCTTCAACACAAGCGAAAGCGACAATTCGCTCAGCGAAACTCTCCCCG 1490 Query 23680 TAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCA 23739 || ||||| | ||||| |||||| || ||| || || ||| Sbjct 1491 CCGTC---GATCCAGCGCAAGGCCCAATCAGCCTTGCGCTTGACAGCGGGGATAGTCTCA 1547 Query 23740 ATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAA 23799 | || || | | | |||||| || ||| | || || || || | || ||| Sbjct 1548 ACAGCACGGAATAAACCCGATTTTTCCTCCGAATCCTTAATGTAAGTCTCCAATAATAAG 1607 Query 23800 CTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCT 23859 |||||||| ||||| |||||||| ||||| || |||||||| ||||| ||| ||| Sbjct 1608 GAGTACATTTCGGAATGGATATTTTCGATAGCGATTTGAAACCCGTAAAATGCTCTCGCT 1667 Query 23860 TCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCA 23919 |||| | |||||| || || | || | ||| | ||| || |||||||| ||| Sbjct 1668 TCAGGAAGTTGAACTTCCTTCATGAAACGACAAGCGAGATTCTCCAGCACAATACCGTCA 1727 Query 23920 CTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC 23966 || || ||||| || || || | | || ||||| | |||||| Sbjct 1728 GATGCGGCGAAGAAGGCGAGCACGTGAGTGATGAAATGACGTTCATC 1774 >seq100015 Length=1511 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 23501 ACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAA 23560 |||| ||||| || || ||||| |||| || || || | | |||||| || || || | Sbjct 1220 ACAACAAACAGGCGAAGTCACAGTGTAATCCCTCGTCTCGAGAAATCAACTCGTTCGAGA 1279 Query 23561 ATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCA-AATGATCCG 23619 | || | ||||||||||| |||||||| || | ||||||||| || ||| || ||| Sbjct 1280 AGGTAAGCCCTGGCATTAACCCTCGTTTCTTGAGCCAAAATATCGC-GCAGAAGCTTCCA 1338 Query 23620 GAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAA 23656 || ||||| || || |||||| || || || |||| Sbjct 1339 GAGAAGAATATCCCTTCAACACAAGCGAAAGCGACAA 1375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 519482096408000