Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq138370 98.7 8e-16 seq31517 84.2 2e-11 >seq138370 Length=13449 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| ||||| | || ||||||||| || ||||||||||| || ||||| |||||| Sbjct 5160 GATAAGGAAGGAATCCCACCAGATCAACAGAGGCTTATCTTTGCTGGAAAACAGCTGGAA 5219 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| ||| |||| |||||||| || |||||||||||||| || ||| | ||| | Sbjct 5220 GATGGTCGCACTTTGGCTGATTACAACATCCAGAAGGAATCTACCCTCCACCTTGTGCTT 5279 Query 29175 CGATTACGAGGAGG 29188 || || | ||||| Sbjct 5280 CGGCTAAGGGGAGG 5293 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || |||||||| | || ||| || ||||||||||||||||| || || || || ||| Sbjct 4704 GACAAAGAAGGCATTCCACCAGACCAGCAAAGACTTATCTTTGCCGGAAAGCAGCTTGAA 4763 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 || | ||| | |||||||||||||| || || ||||| || ||||| | || | Sbjct 4764 GACGGCCGTACTTTAGCCGATTACAATATCCAAAAAGAATCCACCCTTCATCTTGTTCTC 4823 Query 29175 CGATTACGAGGAGGG 29189 ||||| |||||||| Sbjct 4824 AGATTAAGAGGAGGG 4838 >seq31517 Length=16670 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| |||||| | ||| ||| || || || | |||||||| |||||||| || ||| Sbjct 2888 GATAAGGAAGGTATTCCCCCAGACCAGCAGAGGTTGATCTTTGCCGGCAAACAGCTTGAA 2947 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 || | ||| | ||||| || || || ||||||||||| || |||||| |||| | Sbjct 2948 GACGGCCGTACTCTAGCCGACTATAACATCCAGAAGGAATCAACCCTTCACTTGGTTCTT 3007 Query 29175 CGATTACGAGGAGG 29188 ||||| |||| || Sbjct 3008 CGATTGAGAGGTGG 3021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426986149291625