Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq31517 102 7e-17 >seq31517 Length=16670 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| |||| || |||||| |||| || | || || |||||||| || || || || | Sbjct 2795 TTCCTCCTCTCAACCTGAGGACCAAGTGAAGGGTCGATTCCTTTTGGATATTGTAATCGG 2736 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 | || || | |||| || || || || || || | || | |||||||||||| | Sbjct 2735 CTAGAGTACGACCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCTGGAG 2676 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||||||||| |||||| |||||| | ||| ||| ||| ||| Sbjct 2675 GGATTCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTATCGATAGTGTCAGAACTCTCGA 2616 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| ||| || ||||| ||||| | |||||||| || |||||||| Sbjct 2615 CTTCCAAGGTGATTGTCTTTCCGGTGAGGGTTTTGACGAAGATTTGCAT 2567 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || || ||||| || ||||||||||| || || || || |||| || ||||||||||| Sbjct 2991 GTTGATTCCTTCTGGATGTTATAGTCGGCTAGAGTACGGCCGTCTTCAAGCTGTTTGCCG 2932 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || | ||||||||||| ||| | |||||||| || |||||| |||| Sbjct 2931 GCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCTTCCTTATCTTGGATCTTGGCTTTC 2872 Query 21099 ACCTGGCCGACAGTATCACCGGGC--TCCGTTTCCACGGTAATGGTCTTGCCGGTTAACG 21156 || | | | |||| ||| || || ||||| || |||||||| || || | | Sbjct 2871 ACGTTATCAATGGTAT--CCGAGCTTTCAACTTCCAAAGTTATGGTCTTTCCAGTCAGGG 2814 Query 21157 TTTTGACAAATATTTGCATT 21176 | || || || ||||||||| Sbjct 2813 TCTTAACGAAGATTTGCATT 2794 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| || | ||| || ||||| |||||||| ||||| || || || | | ||| Sbjct 3462 AGAACCAAGTGTAGAGTCGATTCCTTCTGAATGTTGTAGTCAGCAAGCGTACGACCATCC 3403 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| || || ||| | || | ||||||||| || || | ||||||||||| Sbjct 3402 TCGAGCTGCTTACCTGCAAAGATCAATCTCTGCTGATCTGGTGGGATCCCTTCCTTGTCT 3343 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||||| || || | ||| ||||||| | ||| |||| || || ||| Sbjct 3342 TGGATCTTTGCCTTAACGTTATCGATAGTATCAGAGCTCTCAACCTCCAAAGTGATTGTC 3283 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || || || ||||| || ||||| || ||||| Sbjct 3282 TTTCCAGTCAACGTCTTAACAAAGATCTGCAT 3251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420928499614700