Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq138370 89.7 4e-13 >seq138370 Length=13449 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| ||||| | || ||||||||| || ||||||||||| || ||||| ||||| Sbjct 5160 GATAAGGAAGGAATCCCACCAGATCAACAGAGGCTTATCTTTGCTGGAAAACAGCTGGAA 5219 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| ||| |||| |||||||| || || ||||||||||| || ||| | ||| | Sbjct 5220 GATGGTCGCACTTTGGCTGATTACAACATCCAGAAGGAATCTACCCTCCACCTTGTGCTT 5279 Query 25248 CGATTACGAGGAGG 25261 || || | ||||| Sbjct 5280 CGGCTAAGGGGAGG 5293 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || |||||||| | || ||| || ||||||||||||||||| || || || | ||| Sbjct 4704 GACAAAGAAGGCATTCCACCAGACCAGCAAAGACTTATCTTTGCCGGAAAGCAGCTTGAA 4763 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 || | ||| | |||||||||||||| ||||| ||||| || ||||| | || | Sbjct 4764 GACGGCCGTACTTTAGCCGATTACAATATCCAAAAAGAATCCACCCTTCATCTTGTTCTC 4823 Query 25248 CGATTACGAGGAGGG 25262 ||||| |||||||| Sbjct 4824 AGATTAAGAGGAGGG 4838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409502222025050