Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq38170 122 9e-23 seq138370 120 3e-22 seq40372 91.5 2e-13 seq31517 82.4 8e-11 >seq38170 Length=7308 Score = 122 bits (134), Expect = 9e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| ||||| || || | |||||||| ||| | || || ||| || Sbjct 6675 AAGATGCAGATCTTCGTGAAAACCCTAACTGAAAAAACCATAACCCTAGAGGTTGAATCC 6616 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | |||| | || || | |||||||| || ||||| ||||| Sbjct 6615 TCTGACACCATCGACAATGTCAAAGCCAAGATCCAAGACAAAGAAGGTATCCCACCGGAC 6556 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 || ||||| ||||||| || || |||||||| || | || | ||||| ||||||| Sbjct 6555 CAACAACGTCTCATCTTTGCCGGAAAACAGCTCGAAGGCGGCAGAACCCTATCCGACTAC 6496 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||||| |||| || || || || Sbjct 6495 AACATCCAGAAGGAATCCACCCTCCACCTTGT 6464 >seq138370 Length=13449 Score = 120 bits (132), Expect = 3e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || ||||||||||| | || || ||| | | Sbjct 4839 ATGCAGATTTTCGTTAAGACCCTCACCGGAAAAACCATCACTTTGGAAGTTGAAAGCTCT 4898 Query 40750 GACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| |||| | || || | |||||||| ||||||||| | ||||| Sbjct 4899 GACACCATTGATAACG-TCAAAGCTAAGATCCAAGACAAAGAAGGCATCCCCCCAGACCA 4957 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | ||||| | ||| || ||||| || || |||| || ||||| || ||||| Sbjct 4958 ACAAAGGCTCATTTTCGCCGGAAAACAACTCGAGGACGGCCGAACCCTGGCTGATTACAA 5017 Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893 ||||||||| ||| |||| || ||| Sbjct 5018 CATCCAGAAAGAGTCCACTCTCCAT 5042 >seq40372 Length=8222 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/215 (73%), Gaps = 10/215 (5%) Strand=Plus/Minus Query 40690 ATGCAAATATTC-GTAAAAACGCTCACGGGCAAAA-CCATCACCGTCGACGTCGAAGCCA 40747 ||||| || ||| || ||||| || || ||||| | |||| ||| | || ||||| Sbjct 1259 ATGCAGATTTTCCGTCAAAACCCTAACCGGCAAGAGCCATTACCTTGGAGGTCGAGAGTT 1200 Query 40748 CCGACA-GCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| || | | |||| |||||| || || | |||||||| | ||| | |||| Sbjct 1199 CCGACACGCATAGACAACG-TCAAGGCCAAGATCCAGGACAAAGAAGTATTCCACACGGA 1141 Query 40806 C-CAGCAACGACTCATCTACGCGGGCAAA-CAGCTGGACGACGAGCGCACCCTCAACGAC 40863 ||||| || ||||||| |||| | ||| ||| |||| |||| || | ||| | |||| Sbjct 1140 TTCAGCAGCGGCTCATCTTCGCGCGGAAAGCAGTTGGAAGACG-GCAGAACCT-AGCGAC 1083 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||||| || | ||||| ||||| || Sbjct 1082 TACAACATCCAGAA-GAATCAACGCTTCATCTCGT 1049 >seq31517 Length=16670 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| || || || || || || ||||| || | || || ||| | | Sbjct 2794 AATGCAAATCTTCGTTAAGACCCTGACTGGAAAGACCATAACTTTGGAAGTTGAAAGCTC 2853 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 || | | | | |||| | || | || || | || || || || || ||| | |||| Sbjct 2854 GGATACCATTGATAACG-TGAAAGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGACC 2912 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| | | |||| || ||||||||||| || |||| || || || |||||| | Sbjct 2913 AGCAGAGGTTGATCTTTGCCGGCAAACAGCTTGAAGACGGCCGTACTCTAGCCGACTATA 2972 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| | || || || | || | || ||||| || || Sbjct 2973 ACATCCAGAAGGAATCAACCCTTCACTTGGTTCTTCGATTGAGAGGTGG 3021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 513553914942000