Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq138370 122 1e-22 seq40372 84.2 3e-11 seq38170 84.2 3e-11 >seq138370 Length=13449 Score = 122 bits (134), Expect = 1e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| || || || ||||| || ||| | || ||||| | Sbjct 4839 ATGCAGATTTTCGTTAAGACCCTCACCGGAAAAACCATCACTTTGGAAGTTGAAAGCTCT 4898 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| || || ||||| |||||||| || || || || ||| Sbjct 4899 GACACCATTGATAACGTCAAAGCTAAGATCCAAGACAAAGAAGGCATCCCCCCAGACCAA 4958 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||||||| ||||| || ||||||||| | ||||| | ||||| | | ||||| || Sbjct 4959 CAAAGGCTCATTTTCGCCGGAAAACAACTCGAGGACGGCCGAACCCTGGCTGATTACAAC 5018 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || ||||| || ||| | |||||||| | ||| | || |||||||| Sbjct 5019 ATCCAGAAAGAGTCCACTCTCCATTTGGTCCTCCGTCTTCGTGGTGGTAT 5068 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | |||||| |||| || || || || ||| | ||| | ||| Sbjct 5294 AATGCAGATTTTCGTTAAGACATTAACCGGAAAGACGATTACTTTGGAGGTGGAAAGCTC 5353 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| |||| | || ||| ||||| ||||| || || || ||||| || || Sbjct 5354 GGATACCATTGATAATGTGAAGGCGAAGATTCAGGATAAGGAGGGAATCCCACCGGACCA 5413 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||| | || ||||| || |||||||| || ||| | | ||| | | |||||||| Sbjct 5414 GCAGAGGTTGATCTTTGCTGGTAAACAATTGGAAGATGGGAGGACACTTGCTGATTATAA 5473 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 ||| || ||||| || ||| | ||| | ||| | ||| | || |||||| Sbjct 5474 TATCCAGAAAGAGTCCACTCTTCATCTTGTTCTTCGTCTTCGTGGTGGT 5522 Score = 95.1 bits (104), Expect = 2e-14 Identities = 164/237 (69%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 124533 AATACA-ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA 124591 |||||| |||||||| ||| | ||||| || || || || || || ||| | || | || Sbjct 4604 AATACAGATGCAAATCTTTGTTAAGACCCTCACCGGAAAGACAATCACTCTTGAAGTCGA 4663 Query 124592 AGCAAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACC 124651 || ||||| || | || || || ||||| |||||||| || ||||| Sbjct 4664 GAGTTCCGACACAATAGACAACGTCAAGGCCAAGATCCAAGACAAAGAAGGCATTCCACC 4723 Query 124652 TGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGA 124711 || || ||||| ||||| ||||| ||||| || | || || | || || |||| || Sbjct 4724 AGACCAGCAAAGACTTATCTTTGCCGGAAAGCAGCTTGAAGACGGCCGTACTTTAGCCGA 4783 Query 124712 TTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| ||||| ||||||||||| || | ||| | ||| | | ||| |||| || || Sbjct 4784 TTACAATATCCAAAAAGAATCCACCCTTCATCTTGTTCTCAGATTAAGAGGAGGGAT 4840 >seq40372 Length=8222 Score = 84.2 bits (92), Expect = 3e-11 Identities = 144/203 (71%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | |||||| | ||| || || || || | ||| |||| ||| | Sbjct 808 ATGCAGATTTTTGTCAAGACATGAGAAGGGAAGACAATCACGTTGGAGGTTGAGAGCTCA 749 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| |||| | || | |||||||| |||||| ||| || ||||||||||| Sbjct 748 -GACACTATTGATAATGTGAAGCC-AAAATTCAGGATAAA--AGGGATTCCACCTGATCA 693 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | || ||||| || || || | || ||| || |||| |||| |||||||| Sbjct 692 GCACGTTTTGATCTTTGCTGGGAAGCAGCTTGAAGATGGTAGAACTTTAGCTGATTATAA 633 Query 124718 TATTCAAAAAGAATCAACTTTGC 124740 ||||| | ||| ||| ||| ||| Sbjct 632 TATTC-AGAAGGATCTACTCTGC 611 >seq38170 Length=7308 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || || ||||| | ||||| ||||| ||||| ||||| | | Sbjct 6672 ATGCAGATCTTCGTGAAAACCCTAACTGAAAAAACCATAACCCTAGAGGTTGAATCCTCT 6613 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | ||| || || ||||| ||||||||||| ||||| || ||| Sbjct 6612 GACACCATCGACAATGTCAAAGCCAAGATCCAAGACAAAGAAGGTATCCCACCGGACCAA 6553 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACA 124684 ||| | || || ||||| |||||||| Sbjct 6552 CAACGTCTCATCTTTGCCGGAAAACA 6527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 753014224560000