Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq138370 91.5 2e-13 seq31517 84.2 2e-11 >seq138370 Length=13449 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||||||||| | | || | ||| | ||| || ||||| ||||||||||| || Sbjct 4837 CCTCCTCTTAATCTGAGAACAAGATGAAGGGTGGATTCTTTTTGGATATTGTAATCGGCT 4778 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||| || |||| || |||||||| || || || || |||| |||||||| | || Sbjct 4777 AAAGTACGGCCGTCTTCAAGCTGCTTTCCGGCAAAGATAAGTCTTTGCTGGTCTGGTGGA 4718 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCG---CTCGATTC 43132 | || || ||||| ||| || |||| ||| | | | |||||| ||| || Sbjct 4717 ATGCCTTCTTTGTCTTGGATCTTGGCCTTGA-CGTTGTCTATTGTGTCGGAACTC---TC 4662 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | ||||| || || || || || ||||| |||||||||||||| Sbjct 4661 GACTTCAAGAGTGATTGTCTTTCCGGTGAGGGTCTTAACAAAGATTTGCAT 4611 Score = 82.4 bits (90), Expect = 9e-11 Identities = 146/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||| | ||| ||| || || || |||||||||||||| || || |||| || Sbjct 5047 ACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGCCAGGGTTCGGCCGTCCTCG 4988 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 || || || || ||||| ||||| | || ||||| | || | || || ||||| | Sbjct 4987 AGTTGTTTTCCGGCGAAAATGAGCCTTTGTTGGTCTGGGGGGATGCCTTCTTTGTCTTGG 4928 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTT 43151 || || ||||| | | | ||||| ||| ||| || || | ||||||||| Sbjct 4927 ATCTTAGCTTTGACGTTATCAATGGTGTCAGAGCT---TTCAACTTCCAAAGTGATGGTT 4871 Query 43152 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || || ||||| || || || ||||| Sbjct 4870 TTTCCGGTGAGGGTCTTAACGAAAATCTGCAT 4839 >seq31517 Length=16670 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/231 (68%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||||||||| || | | ||||| || | || |||||||| ||||||||||| || Sbjct 2794 TCCTCCTCTCAACCTGAGGACCAAGTGAAGGGTCGATTCCTTTTGGATATTGTAATCGGC 2735 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||||| || |||| || || ||||| || ||||| || | || ||||||||| | || Sbjct 2734 TAGAGTACGACCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCTGGAGG 2675 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTC 43132 | | ||||||||| ||| || ||| | | | | ||||| ||| || Sbjct 2674 GATTCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTATCGATAGTGTCAGAACTC---TC 2618 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | ||||| || || || || || || || || ||||||||||| Sbjct 2617 GACTTCCAAGGTGATTGTCTTTCCGGTGAGGGTTTTGACGAAGATTTGCAT 2567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569969378301000