Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26]
258,575 sequences; 1,477,574,977 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq138370 91.5 2e-13
seq31517 86.0 9e-12
>seq138370
Length=13449
Score = 91.5 bits (100), Expect = 2e-13
Identities = 152/228 (67%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
||||| | ||| | | || | ||| | ||| || ||||| ||||||||||| | |
Sbjct 5521 CCACCACGAAGACGAAGAACAAGATGAAGAGTGGACTCTTTCTGGATATTATAATCAGCA 5462
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|| || || | ||| || |||||||| |||||||| ||||| || ||||| ||||| ||
Sbjct 5461 AGTGTCCTCCCATCTTCCAATTGTTTACCAGCAAAGATCAACCTCTGCTGGTCCGGTGGG 5402
Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230
||||| || ||||| || ||||| || ||||| ||
Sbjct 5401 ATTCCCTCCTTATCCTGAATCTTCGCCTTCACATTATCAATGGTATCCGAGCTTTCCACC 5342
Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278
|| | || || || || || |||||||| |||| ||| || ||||||
Sbjct 5341 TCCAAAGTAATCGTCTTTCCGGTTAATGTCTTAACGAAAATCTGCATT 5294
>seq31517
Length=16670
Score = 86.0 bits (94), Expect = 9e-12
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155
|| || ||||| | | ||| | || || || | ||| ||||| ||||| |||||||||
Sbjct 2520 ATGTTGTAATCGGCCAAAGTACGGCCGTCCTCGAGTTGCTTTCCGGCAAAGATCAATCTT 2461
Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187
|||||||| |||||||||||||| ||||||||
Sbjct 2460 TGCTGATCTGGAGGAATTCCTTCCTTATCTTG 2429
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741123183264000
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |