Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq138370 87.8 1e-12 seq31517 86.0 4e-12 >seq138370 Length=13449 Score = 87.8 bits (96), Expect = 1e-12 Identities = 145/201 (72%), Gaps = 10/201 (5%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| |||||||| || | ||| ||| |||| || | || || || |||||| Sbjct 5029 TCTTTCTGGATGTTGTAATCAGCCAGGGTTCGGCCGTCCTCGAGTTGTTTTCCGGCGAAA 4970 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||||| || ||||| ||| | || || ||||| ||||| ||||| || Sbjct 4969 ATGAGCCTTTGTTGGTCTGGGGGGATGCCTTCTTTGTCTTGGATCTTA-GCTTT-GAC-- 4914 Query 34319 GCTATCGAATCG-GTC-GA---TTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTT 34373 | |||| ||| | ||| || ||| || |||| ||||||||||| |||||||| || | Sbjct 4913 GTTATC-AATGGTGTCAGAGCTTTCAACTTCCAAAGTGATGGTTTTTCCGGTGAGGGTCT 4855 Query 34374 TCACAAAGATCTGCATCGCTC 34394 | || || ||||||||| ||| Sbjct 4854 TAACGAAAATCTGCATCCCTC 4834 >seq31517 Length=16670 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| || |||||||| | || |||| |||| || | |||||| || || || Sbjct 3670 TTCCTTCTGAATATTGTAGTCAGCAAGGGTACGGCCGTCCTCGAGCTGCTTACCAGCAAA 3611 Query 34258 AATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGAT 34316 || | || |||||| || | ||| | || ||||| || |||||| ||| | || Sbjct 3610 GATCAACCTCTGCTGATCCGGTGGGATCCCT-TCCTTATCCTGAATCTTTGCCTTGACAT 3552 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | | || | ||| | || || |||| |||||||| || || || ||||| |||| Sbjct 3551 TGTCAATAGTATCCGAACTCTCCACCTCCAAAGTGATGGTCTTCCCAGTCAGAGTCTTCA 3492 Query 34377 CAAAGATCTGCATC 34390 |||||||||||||| Sbjct 3491 CAAAGATCTGCATC 3478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322053876452000