Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq31517 102 6e-17 >seq31517 Length=16670 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||||| |||||||| || || |||| || Sbjct 3687 ACCAAGTGAAGGGTTGATTCCTTCTGAATATTGTAGTCAGCAAGGGTACGGCCGTCCTCG 3628 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || ||||||| ||| || || || || | || ||||| ||| | Sbjct 3627 AGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCCGGTGGGATCCCTTCCTTATCCTGA 3568 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | ||| || ||||||||||| || || ||||| Sbjct 3567 ATCTTTGCCTTGACATTGTCAATAGTATCCGAACTCTCCACCTCCAAAGTGATGGTCTTC 3508 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||||||||||||||||||| ||||| Sbjct 3507 CCAGTCAGAGTCTTCACAAAGATCTGCAT 3479 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || |||||||| || | |||||||| || || ||||| || || ||||| ||| Sbjct 2793 CCTCCTCTCAACCTGAGGACCAAGTGAAGGGTCGATTCCTTTTGGATATTGTAATCGGCT 2734 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| |||| || ||||| ||||||||||| ||||| | ||| ||||| ||||| Sbjct 2733 AGAGTACGACCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCTGGAGGG 2674 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||||||| || || || || | | |||| || ||| || Sbjct 2673 ATTCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTATCGATAGTGTCAGAACTCTCGACT 2614 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || ||||| || || || || || || ||||||||||| Sbjct 2613 TCCAAGGTGATTGTCTTTCCGGTGAGGGTTTTGACGAAGATTTGCAT 2567 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||||||||| | ||||| || || ||| ||||||||||| |||||||| Sbjct 3249 CCACCTCTCAATCGAAGAACCAAATGAAGAGTGGATTCCTTCTGAATATTGTAGTCAGCA 3190 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 ||| | | || || || || || || || || || |||| ||| ||||| || || Sbjct 3189 AGTGTCCTTCCATCTTCAAGCTGCTTACCAGCAAAGATTAACCTCTGCTGGTCTGGTGGG 3130 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||||||| || || ||| |||||| | | | |||| || ||| ||| Sbjct 3129 ATACCCTCCTTATCTTGGATCTTTGCCTTAACATTGTCTATGGTGTCTGAACTCTCAACC 3070 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || ||||| || |||| ||||| || ||||| ||||| Sbjct 3069 TCCAAAGTGATGGTCTTTCCGGTCAATGTCTTAACGAAGATCTGCAT 3023 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||||||||| | |||||||| || || |||||||| ||||| |||||| Sbjct 3021 CCACCTCTCAATCGAAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTATAGTCGGCT 2962 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || || |||| || || ||||| ||||| || ||||||| ||| ||||| || || Sbjct 2961 AGAGTACGGCCGTCTTCAAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGA 2902 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| ||||| || || || || || | | | | ||| | || || Sbjct 2901 ATACCTTCCTTATCTTGGATCTTGGCTTTCACGTTATCAATGGTATCCGAGCTTTCAACT 2842 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || ||||| || ||||| ||||| || ||||||||||| Sbjct 2841 TCCAAAGTTATGGTCTTTCCAGTCAGGGTCTTAACGAAGATTTGCAT 2795 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| |||| | |||||||| || || |||||||||||||||||||| Sbjct 3477 CCACCTCTTAATCGAAGAACCAAGTGTAGAGTCGATTCCTTCTGAATGTTGTAGTCAGCA 3418 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || || || || || || || || ||||| | ||| || || || || Sbjct 3417 AGCGTACGACCATCCTCGAGCTGCTTACCTGCAAAGATCAATCTCTGCTGATCTGGTGGG 3358 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || |||||||| || ||| |||||| | | | || | ||| ||| Sbjct 3357 ATCCCTTCCTTGTCTTGGATCTTTGCCTTAACGTTATCGATAGTATCAGAGCTCTCAACC 3298 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || ||||| || |||| ||||| |||||||| ||||| Sbjct 3297 TCCAAAGTGATTGTCTTTCCAGTCAACGTCTTAACAAAGATCTGCAT 3251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 393830166805075