Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq31517 95.1 1e-14 seq40372 84.2 2e-11 >seq31517 Length=16670 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || || || || || || || |||||| | || || || || Sbjct 2567 ATGCAAATCTTCGTCAAAACCCTCACCGGAAAGACAATCACCTTGGAAGTCGAGAGTTCT 2626 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| | || ||| | || |||||||||||| | || || |||||| Sbjct 2627 GACACTATCGATAACGTGAAAGCCAAGATCCAGGACAAGGAAGGAATCCCTCCAGACCAG 2686 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || ||||| || || || | |||||| | ||| | |||||| || Sbjct 2687 CAGAGATTGATCTTCGCCGGAAAGCAACTCGAAGACGGTCGTACTCTAGCCGATTACAAT 2746 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||| |||||||| ||||| |||| || || |||| || || Sbjct 2747 ATCCAAAAGGAATCGACCCTTCACTTGGTCCTCAGGTTGAGAGGAGG 2793 >seq40372 Length=8222 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/135 (76%), Gaps = 3/135 (2%) Strand=Plus/Minus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 ||||||||| || | || || || ||||||||| | || ||||| |||||||||||||| Sbjct 941 GGACAAGGAGGGTATTCCTCCAGATCAGCAGCGTTTGATCTTCGCCGGCAAACAGTTGGA 882 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| | | || | | ||||| || | |||||| ||||| || | |||||||| || Sbjct 881 AGA-TGCAGAACCTAGCG-GATTACAATA-TCAAAAGGAATCTACGTTGCATCTGGTTCT 825 Query 31405 TAGACTGAGGGGCGG 31419 ||| ||||||| || Sbjct 824 GAGATTGAGGGGAGG 810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444325599414000