Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq138370 87.8 1e-12 seq31517 84.2 2e-11 >seq138370 Length=13449 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || ||||| | ||||||||||| || ||||| |||| || | || || |||||||| Sbjct 4801 TCTTTTTGGATATTGTAATCGGCTAAAGTACGGCCGTCTTCAAGCTGCTTTCCGGCAAAG 4742 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 || | || || || || | || | |||||||| || |||| | ||||| || Sbjct 4741 ATAAGTCTTTGCTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTGACGTTG 4682 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 | | ||||||| | |||||| || | || || || |||||||| || || || ||| Sbjct 4681 TCTATTGTGTCGGAACTCTCGACTTCAAGAGTGATTGTCTTTCCGGTGAGGGTCTTAACA 4622 Query 43099 AAAATTTGCAT 43109 || |||||||| Sbjct 4621 AAGATTTGCAT 4611 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||||||||| |||| ||| || || | |||||||| | | Sbjct 5065 CCACCACGAAGACGGAGGACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGCC 5006 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || |||| || | |||||| ||||| ||||| | | ||||| || | || Sbjct 5005 AGGGTTCGGCCGTCCTCGAGTTGTTTTCCGGCGAAAATGAGCCTTTGTTGGTCTGGGGGG 4946 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCT-CGAC 43061 | |||||||| || |||| ||||||| | ||| ||||| ||| | | || Sbjct 4945 ATGCCTTCTTTGTCTTGGATCTTAGCTTTGACGTTATCAATGGTGTCAG-AGCTTTCAAC 4887 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||||||||| || || || || ||||| ||||| Sbjct 4886 TTCCAAAGTGATGGTTTTTCCGGTGAGGGTCTTAACGAAAATCTGCAT 4839 >seq31517 Length=16670 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | ||||||||||| | ||||| |||| || | ||| || ||||| || Sbjct 2757 TCCTTTTGGATATTGTAATCGGCTAGAGTACGACCGTCTTCGAGTTGCTTTCCGGCGAAG 2698 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 ||||||| ||| || || | || | ||||| || || |||| |||| || | Sbjct 2697 ATCAATCTCTGCTGGTCTGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTA 2638 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 | | ||||| | |||||| || | || || || |||||||| || ||||| || Sbjct 2637 TCGATAGTGTCAGAACTCTCGACTTCCAAGGTGATTGTCTTTCCGGTGAGGGTTTTGACG 2578 Query 43099 AAAATTTGCAT 43109 || |||||||| Sbjct 2577 AAGATTTGCAT 2567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380167758397350