Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq138370 107 1e-18 seq40372 104 2e-17 seq31517 104 2e-17 seq38170 96.9 3e-15 >seq138370 Length=13449 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| ||||| | ||| | |||||||||||| |||||||| || ||||||||| | Sbjct 4837 CCTCCTCTTAATCTGAGAACAAGATGAAGGGTGGATTCTTTTTGGATATTGTAATCGGCT 4778 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | ||||||| | || || || || | || | | ||| ||||| |||| Sbjct 4777 AAAGTACGGCCGTCTTCAAGCTGCTTTCCGGCAAAGATAAGTCTTTGCTGGTCTGGTGGA 4718 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||||||||| || ||| ||| || | ||||| || ||| | | || || Sbjct 4717 ATGCCTTCTTTGTCTTGGATCTTGGCCTTGACGTTGTCTATTGTGTCGGAACTCTCGACT 4658 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | || || || || || || || || || ||||| |||||||| Sbjct 4657 TCAAGAGTGATTGTCTTTCCGGTGAGGGTCTTAACAAAGATTTGCAT 4611 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| || ||||| ||||| || ||||||||||| || ||| |||| || Sbjct 5047 ACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGCCAGGGTTCGGCCGTCCTCG 4988 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||| || ||| | || | | ||||||||| || || ||||||||||| Sbjct 4987 AGTTGTTTTCCGGCGAAAATGAGCCTTTGTTGGTCTGGGGGGATGCCTTCTTTGTCTTGG 4928 Query 15275 AT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || || ||| || || | || ||||| || |||| || || || || |||||||| Sbjct 4927 ATCTTAGCT-TTGACGTTATCAATGGTGTCAGAGCTTTCAACTTCCAAAGTGATGGTTTT 4869 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || || ||||| ||||| Sbjct 4868 TCCGGTGAGGGTCTTAACGAAAATCTGCAT 4839 >seq40372 Length=8222 Score = 104 bits (114), Expect = 2e-17 Identities = 151/212 (71%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || || || || ||||| ||||| ||| |||| ||||| || ||| Sbjct 1284 TGAAGAGTTGATTCCTTCTGGATGTTATAATCAGCTAGGGTTCTGCCGTCTCTTAGCTGT 1343 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || ||| | || | |||||||| || ||||| ||||||||||| |||||| Sbjct 1344 TTCCCGGCGAAGATGAGCCGTTGTTGATCTGGAGGAATGCCTTCTTTGTCTTGGATTTTG 1403 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 || ||| | || || ||||| | | ||||| || | ||||||||||| || || Sbjct 1404 GCTTTGACATTATCGATTGTATCAGAACTCTCTAC-TCCAGAGTAATGGTTTTTCCAGTA 1462 Query 15341 AGAGTTTTTACAAAAATTTGCATATTTGAAAA 15372 || ||||| || || || |||||| ||||||| Sbjct 1463 AGGGTTTTCACGAAGATCTGCATACTTGAAAA 1494 >seq31517 Length=16670 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||||| | ||| || |||||||| || || || || ||||| || ||| | Sbjct 3021 CCACCTCTCAATCGAAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTATAGTCGGCT 2962 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | ||||||| | |||||||| || | ||||| | || ||||| ||| Sbjct 2961 AGAGTACGGCCGTCTTCAAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGA 2902 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| || || || ||| || || | || |||||||| |||| || Sbjct 2901 ATACCTTCCTTATCTTGGATCTTGGCTTTCACGTTATCAATGGTATCCGAGCTTTCAACT 2842 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || || ||||| || || || || |||||||| Sbjct 2841 TCCAAAGTTATGGTCTTTCCAGTCAGGGTCTTAACGAAGATTTGCAT 2795 Score = 93.3 bits (102), Expect = 3e-14 Identities = 165/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||||||| | || | || || ||||| |||||||| |||||||||||| Sbjct 2565 CCTCCTCTCAATCTGAGGACAAGGTGGAGTGTGGACTCTTTTTGGATGTTGTAATCGGCC 2506 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | |||| || | ||| || || || | ||||| | ||| || || ||| Sbjct 2505 AAAGTACGGCCGTCCTCGAGTTGCTTTCCGGCAAAGATCAATCTTTGCTGATCTGGAGGA 2446 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || |||||| ||| || | || || ||||| | || || Sbjct 2445 ATTCCTTCCTTATCTTGGATTTTGGCCTTGACGTTATCAATTGTATCAGAGCTCTCGACC 2386 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAATAAA 15376 || | |||||||| || || || || ||||| || || || ||||| | | | ||||| Sbjct 2385 TCGAGAGTAATGGTCTTTCCAGTTAGGGTTTTCACGAAGATCTGCATCTGTTGACATAAA 2326 Query 15377 A 15377 | Sbjct 2325 A 2325 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||||| | ||| |||||||| ||||| || || || || ||||| || Sbjct 3249 CCACCTCTCAATCGAAGAACCAAATGAAGAGTGGATTCCTTCTGAATATTGTAGTCAGCA 3190 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | || | ||||| | || || ||||| | || || | || ||||| ||| Sbjct 3189 AGTGTCCTTCCATCTTCAAGCTGCTTACCAGCAAAGATTAACCTCTGCTGGTCTGGTGGG 3130 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || || || || || || ||||| ||| ||| | |||||||| || | | || || Sbjct 3129 ATACCCTCCTTATCTTGGATCTTTGC-CTTAACATTGTCTATGGTGTCTGAACTCTCAAC 3071 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || ||||| || || |||| || || || || || |||||| Sbjct 3070 CTCCAAAGTGATGGTCTTTCCGGTCAATGTCTTAACGAAGATCTGCATA 3022 >seq38170 Length=7308 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| || || || |||||||| ||| ||| |||| || |||| | ||| Sbjct 6470 TGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGATAGGGTTCTGCCGCCTTCGAGCTGT 6529 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || || || | || | |||||||||||| ||| || ||||||||||| || ||| Sbjct 6530 TTTCCGGCAAAGATGAGACGTTGTTGGTCCGGTGGGATACCTTCTTTGTCTTGGATCTTG 6589 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 || ||| | || ||||| || ||| || |||| ||| |||||||| | || Sbjct 6590 GCTTTGACATTGTCGATGGTGTCAGAGGATTCAACCTCTAGGGTTATGGTTTTTTCAGTT 6649 Query 15341 AGAGTTTTTACAAAAATTTGCATATT 15366 || ||||| || || || ||||| || Sbjct 6650 AGGGTTTTCACGAAGATCTGCATCTT 6675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361037834694075