Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq138370 161 2e-34 seq31517 145 2e-29 seq40372 102 2e-16 seq43181 86.0 1e-11 seq19165 86.0 1e-11 >seq138370 Length=13449 Score = 161 bits (178), Expect = 2e-34 Identities = 176/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || ||||||| ||| || || || | |||||||| ||||| || || || ||| Sbjct 5296 ATTCCTCCCCTTAGCCGAAGCACAAGGTGGAGGGTAGATTCCTTCTGGATGTTGTAATCA 5237 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | | ||| | ||| ||||| || |||||||||||||| || |||||||||||||| || Sbjct 5236 GCCAAAGTGCGACCATCTTCCAGCTGTTTTCCAGCAAAGATAAGCCTCTGTTGATCTGGT 5177 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || |||||||| ||||| || ||||| ||||| || || || | ||| || | || | || Sbjct 5176 GGGATTCCTTCCTTATCTTGGATCTTAGCTTTCACGTTATCAATGGTGTC-CGAGCTCTC 5118 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | ||||| ||||| || || | ||| || || || |||||||| Sbjct 5117 GACTTCCAAAGTAATCGTCTTCCCGGTCAATGTCTTAACGAAAATCTGCAT 5067 Score = 150 bits (166), Expect = 4e-31 Identities = 164/215 (76%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | || || |||||||| |||||||| |||| || || || || || Sbjct 5507 AAGAACAAGATGAAGAGTGGACTCTTTCTGGATATTATAATCAGCAAGTGTCCTCCCATC 5448 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| | |||||| |||||||| || | |||||| || || || || ||||| || ||||| Sbjct 5447 TTCCAATTGTTTACCAGCAAAGATCAACCTCTGCTGGTCCGGTGGGATTCCCTCCTTATC 5388 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAG-GTTCTACCTCTAGTGTAATAG 104525 ||||||||| || || ||||| || | |||||| | || ||| ||||| | ||||| | Sbjct 5387 CTGAATCTTCGCCTTCACATTATCAATGGTATC-CGAGCTTTCCACCTCCAAAGTAATCG 5329 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 |||| || || | ||| || || || ||||||||| Sbjct 5328 TCTTTCCGGTTAATGTCTTAACGAAAATCTGCATT 5294 Score = 114 bits (126), Expect = 3e-20 Identities = 146/200 (73%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || || || |||| || |||| ||||| || ||||||||||| Sbjct 5035 GTGGACTCTTTCTGGATGTTGTAATCAGCCAGGGTTCGGCCGTCCTCGAGTTGTTTTCCG 4976 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| ||||| ||||| || || || || |||||||| || || ||||| ||||| Sbjct 4975 GCGAAAATGAGCCTTTGTTGGTCTGGGGGGATGCCTTCTTTGTCTTGGATCTTAGCTTTG 4916 Query 104483 ACATTTTCTACGGTATC---GCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || || || | ||| || ||| ||| || || | || || || || || || || Sbjct 4915 ACGTTATCAATGGTGTCAGAGCT---TTCAACTTCCAAAGTGATGGTTTTTCCGGTGAGG 4859 Query 104540 GTTTTTACAAATATCTGCAT 104559 || || || || |||||||| Sbjct 4858 GTCTTAACGAAAATCTGCAT 4839 >seq31517 Length=16670 Score = 145 bits (160), Expect = 2e-29 Identities = 174/235 (74%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 104326 ATTTATTCCC-CCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTAT 104384 ||| |||||| || | || | ||| || | || | || ||||| ||||||||||| | Sbjct 3713 ATTAATTCCCACCACGAAGACGAAGAACCAAGTGAAGGGTTGATTCCTTCTGAATATTGT 3654 Query 104385 AGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGAT 104444 |||||| || || | ||||| || || || || |||||||| || | |||||| |||| Sbjct 3653 AGTCAGCAAGGGTACGGCCGTCCTCGAGCTGCTTACCAGCAAAGATCAACCTCTGCTGAT 3594 Query 104445 CAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAG 104504 | || || || ||||| ||||||||||||||||| || ||||| || | ||||| | Sbjct 3593 CCGGTGGGATCCCTTCCTTATCCTGAATCTTTGCCTTGACATTGTCAATAGTATCCGAAC 3534 Query 104505 GTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| | || || ||||| ||||| || || || ||||| |||||||| Sbjct 3533 TCTCCACCTCCAAAGTGATGGTCTTCCCAGTCAGAGTCTTCACAAAGATCTGCAT 3479 Score = 136 bits (150), Expect = 9e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | | ||| || | ||| | || ||||| ||||||||||| |||||| Sbjct 3252 ATACCACCTCTCAATCGAAGAACCAAATGAAGAGTGGATTCCTTCTGAATATTGTAGTCA 3193 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || || || ||||| || || || |||||||| |||| |||||| || || || Sbjct 3192 GCAAGTGTCCTTCCATCTTCAAGCTGCTTACCAGCAAAGATTAACCTCTGCTGGTCTGGT 3133 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || ||||| || |||||||| || ||||| |||| ||| || | || Sbjct 3132 GGGATACCCTCCTTATCTTGGATCTTTGCCTTAACATTGTCTATGGTGTCTGAACTCTCA 3073 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | || || ||||| || || | ||| || || || |||||||| Sbjct 3072 ACCTCCAAAGTGATGGTCTTTCCGGTCAATGTCTTAACGAAGATCTGCAT 3023 >seq40372 Length=8222 Score = 102 bits (112), Expect = 2e-16 Identities = 145/198 (73%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||| ||| |||||||||||| |||| || ||||||||| ||||| || || || ||| Sbjct 616 GTAGATCCTT-CTGAATATTATAATCAGCTAAAGTTCTACCATCTTCAAGCTGCTTCCCA 674 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | || |||||||| || || ||| |||||||||||| |||| || Sbjct 675 GCAAAGATCAAAACGTGCTGATCAGGTGGAATCCCT--TTTATCCTGAAT-TTTGGCTTC 731 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||||| || | || || || | || ||||| | || || ||||| || ||| Sbjct 732 ACATTATCAATAGTGTC-TGAGCTCTCAACCTCCAACGTGATTGTCTTCCCTTCTCATGT 790 Query 104542 TTTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 791 CTTGACAAAAATCTGCAT 808 Score = 87.8 bits (96), Expect = 4e-12 Identities = 153/215 (71%), Gaps = 7/215 (3%) Strand=Plus/Plus Query 104345 CTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCG 104404 || || || ||||| || |||||||| || ||| |||| || || | ||| ||||| | Sbjct 822 CTCAGAACCAGATGCAACGTAGATTCCTTTTGA-TATTGTAATCCGCTAG-GTTCTGCA- 878 Query 104405 TCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTA 104464 ||||| | ||||| || || || || | | ||| ||||| ||||| || || || || Sbjct 879 TCTTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCCTCCTTG 938 Query 104465 TCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATA 104524 ||||||||||| || || || || || ||||| | ||| ||||| | ||||| Sbjct 939 TCCTGAATCTTGGCCTT--CACGTTATATTGTATCAGAACTTTCAACCTCCAACGTAAT- 995 Query 104525 GTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || | || ||| || || |||||||| Sbjct 996 GTTTTTCCCGTTAATG-TTTCACGAAGATCTGCAT 1029 >seq43181 Length=12838 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 ||||| |||||||||||||| ||||| ||||| || | ||| || || || ||||| Sbjct 3568 CCTTCCTTATCCTGAATCTTAGCTTTGACATTATCGATGGTGTCACTGCTCTCAACCTCG 3509 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || || || ||||| || || || ||||| ||||| |||||||| || Sbjct 3508 AGAGTGATGGTCTTCCCGGTTAGGGTTTTCACAAAGATCTGCATCTT 3462 >seq19165 Length=30349 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 ||||| || ||||||||||| ||||| ||||| || | ||| ||||| || ||||| Sbjct 12386 CCTTCCTTGTCCTGAATCTTAGCTTTGACATTGTCGATGGTGTCGCTGCTCTCAACCTCG 12445 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || || || ||||| || || || ||||| ||||| |||||||| || Sbjct 12446 AGAGTGATGGTCTTCCCGGTTAGGGTTTTCACAAAGATCTGCATCTT 12492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147583826096100