Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq31517 98.7 8e-16 >seq31517 Length=16670 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTC 48576 || || ||||| || ||||| ||||| ||||| ||||| || || || ||||||| Sbjct 3687 ACCAAGTGAAGGGTTGATTCCTTCTGAATATTGTAGTCAGC-AAGGGTACGGCCGTCCTC 3629 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||||| | | || || | |||||||||| || | | |||||| ||| Sbjct 3628 GAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCCGGTGGGATCCCTTCCTTATCCTG 3569 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||| || ||||| | | || ||||| | | |||| ||| | || ||||| || Sbjct 3568 AATCTTTGCCTTGACATTGTCAATAGTATCCGAACTCTCCACCTCCAAAGTGATGGTCTT 3509 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT--CGTGTCTTGATCGAAGAA 48744 || || ||||| |||||||| |||||||| | |||| ||||||||| Sbjct 3508 CCCAGTCAGAGTCTTCACAAAGATCTGCATCCCACCTCTTAATCGAAGAA 3459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419923676208575