Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq10976 116 2e-21 seq129322 114 7e-21 seq129321 114 7e-21 seq50176 114 7e-21 seq252628 111 8e-20 seq180903 111 8e-20 seq136612 111 8e-20 seq228295 109 3e-19 seq222029 109 3e-19 seq22909 107 1e-18 seq93917 105 3e-18 seq66982 105 3e-18 seq257876 104 1e-17 seq145074 104 1e-17 seq131544 104 1e-17 seq91694 102 4e-17 seq9050 100 1e-16 >seq10976 Length=4787 Score = 116 bits (128), Expect = 2e-21 Identities = 77/86 (90%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| || |||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 2749 AAAAAATAAATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 2690 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 2689 GCTCTAACCAACTGAGCTAATAGGCC 2664 Score = 107 bits (118), Expect = 1e-18 Identities = 77/87 (89%), Gaps = 3/87 (3%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| ||| ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 2551 AAAAAA--AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 2494 Query 11504 GCTCTRACCAACTGA-GCTAATGGGCC 11529 ||||| ||||||||| ||||||||||| Sbjct 2493 GCTCTAACCAACTGAGGCTAATGGGCC 2467 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 2940 AAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 2881 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 2880 CAGCTGAGCTAATAGGCC 2863 >seq129322 Length=14170 Score = 114 bits (126), Expect = 7e-21 Identities = 85/100 (85%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 11430 AATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGC 11489 || ||| ||||| ||| || ||| ||||||||| | | |||||||| |||||||||| Sbjct 11980 AAAATAAGATTAAAAAAGAAAAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGC 11921 Query 11490 GTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||| ||||||||||||||| |||| Sbjct 11920 GTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 11881 >seq129321 Length=8788 Score = 114 bits (126), Expect = 7e-21 Identities = 85/100 (85%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 11430 AATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGC 11489 || ||| ||||| ||| || ||| ||||||||| | | |||||||| |||||||||| Sbjct 2176 AAAATAAGATTAAAAAAGAAAAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGC 2235 Query 11490 GTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||| ||||||||||||||| |||| Sbjct 2236 GTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 2275 >seq50176 Length=10985 Score = 114 bits (126), Expect = 7e-21 Identities = 85/100 (85%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 11430 AATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGC 11489 || ||| ||||| ||| || ||| ||||||||| | | |||||||| |||||||||| Sbjct 6704 AAAATAAGATTAAAAAAGAAAAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGC 6645 Query 11490 GTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||| ||||||||||||||| |||| Sbjct 6644 GTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 6605 >seq252628 Length=3117 Score = 111 bits (122), Expect = 8e-20 Identities = 86/101 (85%), Gaps = 3/101 (3%) Strand=Plus/Plus Query 11430 AATATAGAATTAATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 || |||||| |||||||| | || ||||||||| | | |||||||| ||||||||| Sbjct 958 AAAATAGAAAAAATAAAAAG--ATATGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCG 1015 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| ||||||||||||||| |||| Sbjct 1016 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 1056 >seq180903 Length=10878 Score = 111 bits (122), Expect = 8e-20 Identities = 86/101 (85%), Gaps = 3/101 (3%) Strand=Plus/Plus Query 11430 AATATAGAATTAATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 || |||||| |||||||| | || ||||||||| | | |||||||| ||||||||| Sbjct 313 AAAATAGAAAAAATAAAAAG--ATATGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCG 370 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| ||||||||||||||| |||| Sbjct 371 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 411 >seq136612 Length=10392 Score = 111 bits (122), Expect = 8e-20 Identities = 76/85 (89%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| |||| |||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 1628 AAAAATGAAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 1570 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||| |||| Sbjct 1569 CTCTAACCAACTGAGCTAATAGGCC 1545 >seq228295 Length=2409 Score = 109 bits (120), Expect = 3e-19 Identities = 79/92 (86%), Gaps = 4/92 (4%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||||| | ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 440 AATAAAAAAGC----TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 385 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGTC 11532 |||||||| ||||||||||||||| |||| || Sbjct 384 GACGCTCTAACCAACTGAGCTAATAGGCCATC 353 >seq222029 Length=19860 Score = 109 bits (120), Expect = 3e-19 Identities = 79/92 (86%), Gaps = 4/92 (4%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||||| | ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 1160 AATAAAAAAGC----TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 1215 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGTC 11532 |||||||| ||||||||||||||| |||| || Sbjct 1216 GACGCTCTAACCAACTGAGCTAATAGGCCATC 1247 >seq22909 Length=8399 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 5540 AAAATGGCCCATGCAGGTCTCGAACCTACGACCTTCGCGTTATTAGCACGACGCTCTAAC 5599 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 5600 CAACTGAGCTAATAGGCC 5617 >seq93917 Length=3377 Score = 105 bits (116), Expect = 3e-18 Identities = 74/84 (88%), Gaps = 1/84 (1%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| |||| ||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 385 AAAATAAAAT-GGCCCATACAGGTCTCGAACCTACGACCTTCGCGTTATTAGCACGACGC 327 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||||| |||| Sbjct 326 TCTAACCAACTGAGCTAATAGGCC 303 Score = 104 bits (114), Expect = 1e-17 Identities = 84/101 (83%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 11430 AATATAGAATTAATAAAAA-ATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 || ||| || ||| || || | ||| |||||||| | | |||||||| ||||||||| Sbjct 793 AAAATAAAACTAAAAAGAAGAAAAAAATGGCCCATACAGGTCTCGAACCTACGACCTTCG 734 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| ||||||||||||||| |||| Sbjct 733 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 693 >seq66982 Length=6830 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 6030 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 5971 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 5970 CTGAGCTAATAGGCC 5956 >seq257876 Length=4249 Score = 104 bits (114), Expect = 1e-17 Identities = 76/87 (87%), Gaps = 3/87 (3%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCC-CATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| || |||||| |||| | |||||||| |||||||||||||||||||||||| Sbjct 370 AAAAATAAATTTGGCCACATGC--GTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 313 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| ||||||||||||||| ||||| Sbjct 312 GCTCTAACCAACTGAGCTAATAGGCCG 286 >seq145074 Length=14340 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 6412 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 6353 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 6352 TGAGCTAATAGGCC 6339 >seq131544 Length=2713 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 848 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 907 Query 11515 CTGAGCTAATGGGC 11528 |||||||||| ||| Sbjct 908 CTGAGCTAATAGGC 921 >seq91694 Length=6515 Score = 102 bits (112), Expect = 4e-17 Identities = 71/80 (89%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 11446 AAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| ||| ||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 2085 AAAATAAAAGCTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 2026 Query 11505 CTCTRACCAACTGAGCTAAT 11524 |||| ||||||||||||||| Sbjct 2025 CTCTAACCAACTGAGCTAAT 2006 >seq9050 Length=27885 Score = 100 bits (110), Expect = 1e-16 Identities = 70/79 (89%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 11452 AAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 |||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| | Sbjct 5282 AAATGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAA 5341 Query 11511 CCAACTGAGCTAATGGGCC 11529 ||| |||||||||| |||| Sbjct 5342 CCAGCTGAGCTAATAGGCC 5360 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 260667141126700