Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_006356.2 Length=36012 Score E Sequences producing significant alignments: (Bits) Value seq150087 208 2e-49 >seq150087 Length=20667 Score = 208 bits (230), Expect = 2e-49 Identities = 349/497 (70%), Gaps = 6/497 (1%) Strand=Plus/Plus Query 5364 GCTGCTTATTACCTAAAAGACAAAGAAACTAAAGAACTAATTTATGGCGGTGCAGCAGGA 5423 |||| ||||||||| ||||| || || | || || |||| ||||| || ||||| Sbjct 10859 GCTGTTTATTACCTCAAAGATAATTTTACACAGGATATACTTTACGGCGGGGCCGCAGGG 10918 Query 5424 GGTGGTAAAAGTGCATTGGGTATTTTATGGCTTATAGAACAATGTCAAGCATATCCTGGC 5483 |||||||| || ||||| |||||||| ||||||||||||||||| || || ||| Sbjct 10919 GGTGGTAAGTCGGCTTTGGGCTGCTTATGGCTCATAGAACAATGTCAAGCCTACCCAGGC 10978 Query 5484 ACTCGTTGGCTAATGGGTAG-ATCTAAATTAAAGGCATTAAAAGAAACTACATTAAACAC 5542 ||||| ||||| ||||| | | | || ||||| || ||||||||||||| | || || Sbjct 10979 ACTCGCTGGCTTATGGGGCGCAGCAAACTTAAA-GCTCTAAAAGAAACTACGCTTAATAC 11037 Query 5543 TTTCTTTGAACAGGCTTCTATACTTAAAATAACTGAGCAGTACAATTATAATGCACAATC 5602 ||| || || ||| ||| | |||||| | | |||| | || || | ||| Sbjct 11038 TTTTTTCGAGTTGGCCTCTGCTTTAAAAATAGCCAATCAGTTTAGATACAACGGTCAAGA 11097 Query 5603 AGGCGTTATCTATTGGAATAATGGTAGTGAAATATTGTTAAAGGATCTTTATGC-ATACC 5661 | ||| | ||||| || || || ||||| | | |||||| || |||| |||| Sbjct 11098 CAACACCATCAACTGGAACAACGGCAGCCAAATACTTCTTAAGGAT-TTAATGCTCTACC 11156 Query 5662 CTTCAGATCAAAATTTCGACTCGCTT-GGGTCACTTGAAATTTCTGGAGCATTTATAGAT 5720 | || | |||||| ||| |||| || || ||||||||| | || || ||||| || Sbjct 11157 CCAGCGACCCAAATTTTGAC-AGCTTAGGCTCCCTTGAAATTACGGGCGCTTTTATTGAC 11215 Query 5721 GAATGTAATCAAATAACTTATAAAGCATGGCAAATTGTTAAGTCTAGGATTAGATATAAG 5780 || || || || | || || ||||||||||||| ||||||| | ||| |||||||| Sbjct 11216 GAGTGCAACCAGGTTACATACAAAGCATGGCAAACTGTTAAGAGCCGAATTCGATATAAG 11275 Query 5781 CTAAATCAATACGGTATAGAGCCAAAGATGTTAGGCACTTGCAATCCTGCTAAGAATTGG 5840 ||||| ||| |||| | || || || |||| ||||| || || || || || ||| Sbjct 11276 CTAAACGAATGTGGTAAAATACCGAAAATACTAGGTACTTGTAACCCAGCAAAAAACTGG 11335 Query 5841 GTTTACGCTCAGTTTTA 5857 || || || |||| || Sbjct 11336 GTGTATGCCGAGTTCTA 11352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114763324872100