Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq31517 154 1e-32 seq138370 122 8e-23 seq40372 118 9e-22 seq38170 111 1e-19 >seq31517 Length=16670 Score = 154 bits (170), Expect = 1e-32 Identities = 175/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || ||||||||||||| | || | ||| | || || || ||||| | ||| | Sbjct 2573 TTTGCATCCCTCCTCTCAATCTGAGGACAAGGTGGAGTGTGGACTCTTTTTGGATGTTGT 2514 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 ||||| || ||| | ||||| || || |||||| ||||||| ||||||||||||| Sbjct 2513 AATCGGCCAAAGTACGGCCGTCCTCGAGTTGCTTTCCGGCAAAGATCAATCTTTGCTGAT 2454 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||||||||| ||||| || || | ||||| ||||||||| | | || |||| | Sbjct 2453 CTGGAGGAATTCCTTCCTTATCTTGGATTTTGGCCTTGACGTTATCAATTGTATCAGAGC 2394 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || | || ||||| |||||||| || |||||||| ||||||||||| Sbjct 2393 TCTCGACCTCGAGAGTAATGGTCTTTCCAGTTAGGGTTTTCACGAAGATCTGCAT 2339 Score = 132 bits (146), Expect = 4e-26 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| ||||| | |||||||| | ||| |||||||| || | ||| || || | Sbjct 3477 CCACCTCTTAATCGAAGAACCAAGTGTAGAGTCGATTCCTTCTGAATGTTGTAGTCAG-C 3419 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | || || || |||||| ||||| || || ||||||| ||||| ||||||||||| | Sbjct 3418 A-AGCGTACGACCATCCTCGAGCTGCTTACCTGCAAAGATCAATCTCTGCTGATCTGGTG 3360 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | || ||||| ||||| | || |||||||| ||| ||| ||| |||| | || | Sbjct 3359 GGATCCCTTCCTTGTCTTGGATCTTTGCCTTAACGTTATCGATAGTATCAGAGCTCTCAA 3300 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || | ||||| || |||||||| | || || |||||||||||||| Sbjct 3299 CCTCCAAAGTGATTGTCTTTCCAGTCAACGTCTTAACAAAGATCTGCAT 3251 Score = 125 bits (138), Expect = 6e-24 Identities = 171/237 (72%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || |||||||||||| | | |||||||| | || ||||||||||| | || | Sbjct 2801 TTTGCATTCCTCCTCTCAACCTGAGGACCAAGTGAAGGGTCGATTCCTTTTGGATATTGT 2742 Query 94833 AATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 ||||| ||| || || || || || || |||||| | ||||| ||||| ||||| Sbjct 2741 AATCG--GCTAGAGTACGACCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTCTGCTG 2684 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 |||||||| || ||||| ||||| | || || || || ||| ||| |||||||| Sbjct 2683 GTCTGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTATCGATAGTGTCAGA 2624 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || | ||||| || ||||| || || ||||| || ||||| ||||| Sbjct 2623 ACTCTCGACTTCCAAGGTGATTGTCTTTCCGGTGAGGGTTTTGACGAAGATTTGCAT 2567 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||||||| | |||||||| | || |||||||| || | |||||| ||| Sbjct 3021 CCACCTCTCAATCGAAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTATAGTCGGCT 2962 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | || || |||||||| ||| ||||||| || || ||||| ||||| ||| Sbjct 2961 AGAGTACGGCCGTCTTCAAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGA 2902 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| || || | || || || || ||| | | || || | | || || Sbjct 2901 ATACCTTCCTTATCTTGGATCTTGGCTTTCACGTTATCAATGGTATCCGAGCTTTCAACT 2842 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || ||||| |||||||| || || || || ||||| ||||| Sbjct 2841 TCCAAAGTTATGGTCTTTCCAGTCAGGGTCTTAACGAAGATTTGCAT 2795 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || || ||||||| || || |||||||| || || || ||||| || Sbjct 3633 TCCTCGAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCCGGTGGGATCCCTTCCTTA 3574 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| ||||||||||| | | | ||| || | || || || | |||||| Sbjct 3573 TCCTGAATCTTTGCCTTGACATTGTCAATAGTATCCGAACTCTCCACCTCCAAAGTGATG 3514 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| ||||| ||||||||||||||||| Sbjct 3513 GTCTTCCCAGTCAGAGTCTTCACAAAGATCTGCAT 3479 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||||||| | ||||| || | ||| |||||||| || | || || || | Sbjct 3249 CCACCTCTCAATCGAAGAACCAAATGAAGAGTGGATTCCTTCTGAATATTGTAGTCAG-C 3191 Query 94841 ATAGTGT--TGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | ||||| | ||| || ||||| || || |||||||||| || ||||| ||||| | Sbjct 3190 A-AGTGTCCTTCCATCTTCAAGCTGCTTACCAGCAAAGATTAACCTCTGCTGGTCTGGTG 3132 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | ||||| || || || | || |||||||| || | | | ||||| | || | Sbjct 3131 GGATACCCTCCTTATCTTGGATCTTTGCCTTAACATTGTCTATGGTGTCTGAACTCTCAA 3072 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || | |||||||| ||||| || | || || || ||||||||||| Sbjct 3071 CCTCCAAAGTGATGGTCTTTCCGGTCAATGTCTTAACGAAGATCTGCAT 3023 >seq138370 Length=13449 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||| |||| | || | || | || ||||| ||||| | || |||||| Sbjct 4837 CCTCCTCTTAATCTGAGAACAAGATGAAGGGTGGATTCTTTTTGGATATTGTAATCGGCT 4778 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | || || ||||| |||||| ||||||| | ||||||||| ||||| ||| Sbjct 4777 AAAGTACGGCCGTCTTCAAGCTGCTTTCCGGCAAAGATAAGTCTTTGCTGGTCTGGTGGA 4718 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||||||||| | || || ||||||||| | | | ||||| | ||||| Sbjct 4717 ATGCCTTCTTTGTCTTGGATCTTGGCCTTGACGTTGTCTATTGTGTCGGAACTCTCGACT 4658 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| ||||| || ||||| || || || || |||||||| ||||| Sbjct 4657 TCAAGAGTGATTGTCTTTCCGGTGAGGGTCTTAACAAAGATTTGCAT 4611 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| || | ||| || || || || | ||| ||||| || || | ||||| Sbjct 5047 ACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGCCAGGGTTCGGCCGTCCTCG 4988 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || ||||||||| | || || | ||||| || ||||| || || ||||||||||| | Sbjct 4987 AGTTGTTTTCCGGCGAAAATGAGCCTTTGTTGGTCTGGGGGGATGCCTTCTTTGTCTTGG 4928 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || || |||||| | | ||||||| | || || || | |||||||||||| Sbjct 4927 ATCTTAGCTTTGACGTTATCAATGGTGTCAGAGCTTTCAACTTCCAAAGTGATGGTTTTT 4868 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || || |||||||| Sbjct 4867 CCGGTGAGGGTCTTAACGAAAATCTGCAT 4839 Score = 89.7 bits (98), Expect = 5e-13 Identities = 163/239 (68%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| | | || |||||| || | || | ||| | ||| | ||||||||||| || | | Sbjct 5305 AAAATCTGCATTCCTCCCCTTAGCCGAAGCACAAGGTGGAGGGTAGATTCCTTCTGGATG 5246 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || ||||| || |||| ||| |||||||||||||| ||||||| | || || Sbjct 5245 TTGTAATCAGCCAAAGTGCGACCATCTTCCAGCTGTTTTCCAGCAAAGATAAGCCTCTGT 5186 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 |||||||| || || ||||| || || | || || || || ||| | | ||||| Sbjct 5185 TGATCTGGTGGGATTCCTTCCTTATCTTGGATCTTAGCTTTCACGTTATCAATGGTGTCC 5126 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | ||||| || | || || || || || || | || || || || |||||||| Sbjct 5125 GAGCTCTCGACTTCCAAAGTAATCGTCTTCCCGGTCAATGTCTTAACGAAAATCTGCAT 5067 >seq40372 Length=8222 Score = 118 bits (130), Expect = 9e-22 Identities = 154/209 (74%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATC-GCTCATAGTGTTGGAATCCTCCAGCT 94862 ||| | ||| |||||||| || | ||||||||| ||| | || || || |||| Sbjct 1283 GTGAAGAGTTGATTCCTTCTGGATGTTATAATCAGCT-AGGGTTCTGCCGTCTCTTAGCT 1341 Query 94863 GTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTT 94922 |||| ||| | ||||| | | ||| |||||||||||||| ||||||||||| | |||| Sbjct 1342 GTTTCCCGGCGAAGATGAGCCGTTGTTGATCTGGAGGAATGCCTTCTTTGTCTTGGATTT 1401 Query 94923 TTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAG 94982 | || ||||| ||| || |||| || || || | || ||||||||||||| Sbjct 1402 TGGCTTTGACATTATCGATTGTATCAGAACTCTCTAC-TCCAGAGTAATGGTTTTTCCAG 1460 Query 94983 TAAGAGTTTTCACAAAGATCTGCATGCTT 95011 |||| |||||||| ||||||||||| ||| Sbjct 1461 TAAGGGTTTTCACGAAGATCTGCATACTT 1489 Score = 114 bits (126), Expect = 1e-20 Identities = 174/240 (73%), Gaps = 7/240 (3%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || ||||| ||||||| || |||| ||||| |||||||||||||| | Sbjct 797 AAAAATCTGCATGCCTCCCCTCAATCTCAGAACCAGATGCAACGTAGATTCCTTTTG-AT 855 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 || ||||| | | ||| | | ||| |||| |||||| ||| | ||||| || | || Sbjct 856 ATTGTAATC-CGC-TAGGTTCTGCATCTTCCAACTGTTTGCCGGCGAAGATCAAACGCTG 913 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 |||||||||||||||||| || ||||| | ||| || ||||| ||| | || || Sbjct 914 CTGATCTGGAGGAATACCCTCCTTGTCCTGAATCTTGGCCTTCACG--TTATATTGTATC 971 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || | ||| || |||||||| || | | |||||| ||||||||||| Sbjct 972 AGAACTTTCAACCTCCAACGTAAT-GTTTTTCCCGTTA-ATGTTTCACGAAGATCTGCAT 1029 >seq38170 Length=7308 Score = 111 bits (122), Expect = 1e-19 Identities = 146/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTG-GAATCCTCC-AGCTGTTTTC 94868 || |||||||| || | ||| || ||| |||| ||| | ||| | |||||||||| Sbjct 6476 GTGGATTCCTTCTGGATGTTGTAGTCGG--ATAGGGTTCTGCCGCCTTCGAGCTGTTTTC 6533 Query 94869 CGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCT 94928 || ||||||| | | ||| || || || || |||||||||||||| | || || || | Sbjct 6534 CGGCAAAGATGAGACGTTGTTGGTCCGGTGGGATACCTTCTTTGTCTTGGATCTTGGCTT 6593 Query 94929 TGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAG 94988 |||| | ||| ||||||| | || || || | || ||||||||| |||| || | Sbjct 6594 TGACATTGTCGATGGTGTCAGAGGATTCAACCTCTAGGGTTATGGTTTTTTCAGTTAGGG 6653 Query 94989 TTTTCACAAAGATCTGCAT 95007 ||||||| ||||||||||| Sbjct 6654 TTTTCACGAAGATCTGCAT 6672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 446842238787000