Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq38170 111 2e-19 seq138370 104 2e-17 seq31517 84.2 2e-11 >seq38170 Length=7308 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 ||| ||||| | || || ||||| |||||| |||| | || ||| | || | ||||| Sbjct 6676 CAAGATGCAGATCTTCGTGAAAACCCTAACTGAAAAAACCATAACCCTAGAGGTTGAATC 6617 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 ||||||||||| | |||||| ||||| ||||||||||| || || || || Sbjct 6616 CTCTGACACCATCGACAATGTCAAAGCCAAGATCCAAGACAAAGAAGGTATCCCACCGGA 6557 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 |||||| | ||||| | | ||| ||||| ||||||| | |||| | | |||||| Sbjct 6556 CCAACAACGTCTCATCTTTGCCGGAAAACAGCTCGAAGGCGGCAGAACCCTATCCGACTA 6497 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || ||||| || |||| || ||||| Sbjct 6496 CAACATCCAGAAGGAATCCACCCTCCACCTTGTCCT 6461 >seq138370 Length=13449 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || || || | || |||||| | ||||| | ||| | ||| Sbjct 4839 ATGCAGATTTTCGTTAAGACCCTCACCGGAAAAACCATCACTTTGGAAGTTGAAAGCTCT 4898 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | |||||| ||||| ||||||||||| || || || || ||| Sbjct 4899 GACACCATTGATAACGTCAAAGCTAAGATCCAAGACAAAGAAGGCATCCCCCCAGACCAA 4958 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||| ||||||| || ||| ||||||||||| || | ||| | | || || ||| Sbjct 4959 CAAAGGCTCATTTTCGCCGGAAAACAACTCGAGGACGGCCGAACCCTGGCTGATTACAAC 5018 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || ||||| || ||| ||||| ||||||| Sbjct 5019 ATCCAGAAAGAGTCCACTCTCCATTTGGTCCT 5050 >seq31517 Length=16670 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || ||||| | || ||||| | |||||| | ||| | || Sbjct 2567 ATGCAAATCTTCGTCAAAACCCTCACCGGAAAGACAATCACCTTGGAAGTCGAGAGTTCT 2626 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| ||||| | || ||| ||||| ||||| ||||| || ||||| || || Sbjct 2627 GACACTATCGATAACGTGAAAGCCAAGATCCAGGACAAGGAAGGAATCCCTCCAGACCAG 2686 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || ||| | || | || ||| || ||||||||||| | | | | | ||| || || Sbjct 2687 CAGAGATTGATCTTCGCCGGAAAGCAACTCGAAGACGGTCGTACTCTAGCCGATTACAAT 2746 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 || ||||| ||||| || | || ||||||| || | |||||||||| Sbjct 2747 ATCCAAAAGGAATCGACCCTTCACTTGGTCCTCAGGTTGAGAGGAGGAA 2795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477115273374000