Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq31517 113 4e-20 seq138370 89.7 5e-13 seq38170 87.8 2e-12 >seq31517 Length=16670 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || ||||| ||||| |||||||||||| || || || |||||| || ||||| || Sbjct 2535 GTGGACTCTTTTTGGATGTTGTAATCGGCCAAAGTACGGCCGTCCTCGAGTTGCTTTCCG 2476 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 || |||| || | ||||| || ||||| |||||||| || || |||||| |||| Sbjct 2475 GCAAAGATCAATCTTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGGATTTTGGCCTTG 2416 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | ||||| | | ||||| |||| |||| ||| || || ||||| ||| Sbjct 2415 ACGTTATCAATTGTATCAGAGCTCTCGACCTCGAGAGTAATGGTCTTTCCAGTTAGGGTT 2356 Query 131218 TTTACGAAAATCTGCAT 131234 || ||||| |||||||| Sbjct 2355 TTCACGAAGATCTGCAT 2339 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 || || || || | |||||| |||||||| || ||||||||| | || || ||| Sbjct 2778 AGGACCAAGTGAAGGGTCGATTCCTTTTGGATATTGTAATCGGCTAGAGTACGACCGTCT 2719 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 || || ||||| || ||| |||| || | ||||||||| |||||||||||||| ||||| Sbjct 2718 TCGAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCTGGAGGGATTCCTTCCTTGTCC 2659 Query 131143 GTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTT 131202 ||| || || | | || | ||| || | ||||| || | ||| | || Sbjct 2658 TGGATCTTGGCTTTCACGTTATCGATAGTGTCAGAACTCTCGACTTCCAAGGTGATTGTC 2599 Query 131203 TTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || ||||| || ||||| ||||| || ||||| Sbjct 2598 TTTCCGGTGAGGGTTTTGACGAAGATTTGCAT 2567 >seq138370 Length=13449 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || ||||| | || ||||| || || ||||||||||| | Sbjct 5065 CCACCACGAAGACGGAGGACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGCC 5006 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| || || || || ||| | || | | || ||||| || ||| Sbjct 5005 AGGGTTCGGCCGTCCTCGAGTTGTTTTCCGGCGAAAATGAGCCTTTGTTGGTCTGGGGGG 4946 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| ||| || |||| | || | || || | | || | Sbjct 4945 ATGCCTTCTTTGTCTTGGATCTTAGCTTTGACGTTATCAATGGTGTCAGAGCTTTCAACT 4886 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | |||||| ||||| || || || |||||||||||||| Sbjct 4885 TCCAAAGTGATGGTTTTTCCGGTGAGGGTCTTAACGAAAATCTGCAT 4839 >seq38170 Length=7308 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096 ||| || ||||| || |||||||| ||| | ||| | | | || ||||| || || Sbjct 6475 GGTGGATTCCTTCTGGATGTTGTAGTCGGATAGGGTTCTGCCGCCTTCGAGCTGTTTTCC 6534 Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 || |||| | ||| || |||||||| ||||| ||||||||||| ||| || || Sbjct 6535 GGCAAAGATGAGACGTTGTTGGTCCGGTGGGATACCTTCTTTGTCTTGGATCTTGGCTTT 6594 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 || | || | || || | ||| || | || | ||| | |||||| | ||||| || Sbjct 6595 GACATTGTCGATGGTGTCAGAGGATTCAACCTCTAGGGTTATGGTTTTTTCAGTTAGGGT 6654 Query 131217 TTTTACGAAAATCTGCAT 131234 ||| ||||| |||||||| Sbjct 6655 TTTCACGAAGATCTGCAT 6672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 470487166128000