Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq138370 134 1e-26 seq31517 129 5e-25 >seq138370 Length=13449 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| | ||||| || | ||||| | ||||| ||| || Sbjct 4611 ATGCAAATCTTTGTTAAGACCCTCACCGGAAAGACAATCACTCTTGAAGTCGAGAGTTCC 4670 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||||||||| |||||||| ||||| Sbjct 4671 GACACAATAGACAACGTCAAGGCCAAGATCCAAGACAAAGAAGGCATTCCACCAGACCAG 4730 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | |||| |||||||| || || | ||||| | || ||| | | |||||||||| Sbjct 4731 CAAAGACTTATCTTTGCCGGAAAGCAGCTTGAAGACGGCCGTACTTTAGCCGATTACAAT 4790 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || |||||||||||||| || ||| | || || || |||||||||| Sbjct 4791 ATCCAAAAAGAATCCACCCTTCATCTTGTTCTCAGATTAAGAGGAGG 4837 Score = 109 bits (120), Expect = 5e-19 Identities = 155/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | ||||| ||| ||||||| | ||||| || ||| Sbjct 4839 ATGCAGATTTTCGTTAAGACCCTCACCGGAAAAACCATCACTTTGGAAGTTGAAAGCTCT 4898 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| |||| || | || ||||||||||| || || || || Sbjct 4899 GACACCATTGATAACGTCA---AAGCTAAGATCCAA-GACAAAGAAGGCATCCCCCCAGA 4954 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||| || | ||||| ||||| |||||| | || || | || || ||| ||||| Sbjct 4955 CCAACAAAGGCTCATTTTCGCCGGAAAACAACTCGAGGACGGCCGAACCCTGGCTGATTA 5014 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || ||||| ||||| || ||||| || || Sbjct 5015 CAACATCCAGAAAGAGTCCACTCTCCATTTGGTCCT 5050 >seq31517 Length=16670 Score = 129 bits (142), Expect = 5e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || | ||||| || | ||||| | ||||| ||| ||| Sbjct 2567 ATGCAAATCTTCGTCAAAACCCTCACCGGAAAGACAATCACCTTGGAAGTCGAGAGTTCT 2626 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||||||||| | || |||| || ||| ||||| ||||| || || || ||||| Sbjct 2627 GACACTATCGA-TAACGTGAAAGCCAAGATCCAGGACAAGGAAGGAATCCCTCCAGACCA 2685 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | || || ||||| || ||| | ||||| | ||| ||| | | ||||||||| Sbjct 2686 GCAGAGATTGATCTTCGCCGGAAAGCAACTCGAAGACGGTCGTACTCTAGCCGATTACAA 2745 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||| ||||| ||||| || || || || || || ||| | |||||||||| Sbjct 2746 TATCCAAAAGGAATCGACCCTTCACTTGGTCCTCAGGTTGAGAGGAGGAA 2795 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||||||| || ||||||| | || || ||| || Sbjct 3023 ATGCAGATCTTCGTTAAGACATTGACCGGAAAGACCATCACTTTGGAGGTTGAGAGTTCA 3082 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || || || ||| ||| ||| || || || || || ||||| |||| Sbjct 3083 GACACCATAGA--CAATGTTAAGGCAAAGATCCAAGATAAGGAGGGTATCCCACCAGACC 3140 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| || | || ||||| || || || | ||||||| | || | | || |||| Sbjct 3141 AGCAGAGGTTAATCTTTGCTGGTAAGCAGCTTGAAGATGGAAGGACACTTGCTGACTACA 3200 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||| || |||||||| || ||||| || || Sbjct 3201 ATATTCAGAAGGAATCCACTCTTCATTTGGTTCT 3234 Score = 93.3 bits (102), Expect = 4e-14 Identities = 164/236 (69%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| |||| || || ||||||| | || |||||| || Sbjct 3479 ATGCAGATCTTTGTGAAGACTCTGACTGGGAAGACCATCACTTTGGAGGTGGAGAGTTCG 3538 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| || || || | ||||| | ||| || || |||||||| ||||| || Sbjct 3539 GATACTATTGA--CAATGTCAAGGCAAAGATTCAG-GATAAGGAAGGGATCCCACCGGAT 3595 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| || | || ||||| || || || | || || | || || | | || ||| Sbjct 3596 CAGCAGAGGTTGATCTTTGCTGGTAAGCAGCTCGAGGACGGCCGTACCCTTGCTGACTAC 3655 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 |||||||| || ||||| || || || || || || | || | || || ||||| Sbjct 3656 AATATTCAGAAGGAATCAACCCTTCACTTGGTTCTTCGTCTTCGTGGTGGGAATTA 3711 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||| |||| || || |||| || | ||||| || || Sbjct 2794 AATGCAAATCTTCGTTAAGACCCTGACTGGAAAGACCATAACTTTGGAAGTTGAAAGCTC 2853 Query 25058 TGACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || || || | || |||| || ||| || || ||||| ||||| || |||| Sbjct 2854 GGATACCATTGA-TAACGTGAAAGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGACC 2912 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| || | || |||||||||||||| | ||||| | || ||| | | ||| || | Sbjct 2913 AGCAGAGGTTGATCTTTGCCGGCAAACAGCTTGAAGACGGCCGTACTCTAGCCGACTATA 2972 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || || || ||||| || || || || || || Sbjct 2973 ACATCCAGAAGGAATCAACCCTTCACTTGGTTCT 3006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 431962417588625