Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq72046 104 3e-17 seq147022 93.3 5e-14 seq88843 93.3 5e-14 seq232698 87.8 2e-12 seq35381 87.8 2e-12 seq194542 86.0 7e-12 seq58159 86.0 7e-12 seq56111 84.2 2e-11 seq49727 84.2 2e-11 seq239530 82.4 8e-11 seq167517 82.4 8e-11 >seq72046 Length=11309 Score = 104 bits (114), Expect = 3e-17 Identities = 94/116 (81%), Gaps = 3/116 (3%) Strand=Plus/Plus Query 126262 TACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC--GGG 126319 || ||||||| ||||||||||||||||||||||||| | ||| |||||||| | | | | Sbjct 95 TAAAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGCAAGAG 154 Query 126320 AGCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTTGCGGTT 126375 ||||||||||| || ||||| |||||| ||||| | |||||||||||| || Sbjct 155 AGCGTGGGTTCAAATCCCACTTCTGACATTTTATT-TAAATATTTTTGTTGCGCTT 209 Score = 93.3 bits (102), Expect = 5e-14 Identities = 72/85 (85%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC--GGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||||| | | | |||| Sbjct 11134 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGCAAGAGAGC 11193 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 11194 GTGGGTTCAAATCCCACTTCTGACA 11218 >seq147022 Length=5631 Score = 93.3 bits (102), Expect = 5e-14 Identities = 72/85 (85%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC--GGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||||| | | | |||| Sbjct 3637 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGCAAGAGAGC 3696 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 3697 GTGGGTTCAAATCCCACTTCTGACA 3721 >seq88843 Length=6216 Score = 93.3 bits (102), Expect = 5e-14 Identities = 72/85 (85%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC--GGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||||| | | | |||| Sbjct 1027 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGCAAGAGAGC 968 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 967 GTGGGTTCAAATCCCACTTCTGACA 943 >seq232698 Length=10773 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/87 (83%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 656 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 599 Query 126325 GGGTTCGAACCCCACACCTGACAAATT 126351 |||||| || |||||| ||| |||||| Sbjct 598 GGGTTCAAATCCCACAGCTGTCAAATT 572 >seq35381 Length=19510 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/87 (83%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 1899 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 1956 Query 126325 GGGTTCGAACCCCACACCTGACAAATT 126351 |||||| || |||||| ||| |||||| Sbjct 1957 GGGTTCAAATCCCACAGCTGTCAAATT 1983 >seq194542 Length=4903 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||||| | | ||||| Sbjct 642 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTAAGAGAGCG 583 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 582 TGGGTTCAAATCCCACTTCTGACA 559 >seq58159 Length=20016 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||||| | | ||||| Sbjct 11189 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTAAGAGAGCG 11248 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 11249 TGGGTTCAAATCCCACTTCTGACA 11272 >seq56111 Length=6286 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 2950 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 3007 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||| || |||||| ||| ||| || || Sbjct 3008 GGGTTCAAATCCCACAGCTGTCAATTTTTT 3037 >seq49727 Length=3382 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 2227 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 2284 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||| || |||||| ||| ||| || || Sbjct 2285 GGGTTCAAATCCCACAGCTGTCAATTTTTT 2314 >seq239530 Length=2744 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 1153 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 1096 Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354 ||| || |||||| ||| ||| || || Sbjct 1095 TTCAAATCCCACAGCTGTCAATTTTTT 1069 >seq167517 Length=7094 Score = 82.4 bits (90), Expect = 8e-11 Identities = 80/97 (82%), Gaps = 6/97 (6%) Strand=Plus/Minus Query 126265 AGTCAGGT-TGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTC-CCT-CGGGAG 126321 ||||||| ||||||||||||||||||||||||| | ||| |||||||| ||| | ||| Sbjct 5087 AGTCAGGAATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCCTAAGAGAG 5028 Query 126322 CGTGGGTTCGAACCCCAC-ACCTGACAAATTATTATT 126357 ||||||||| || ||||| ||||| ||| ||||| Sbjct 5027 CGTGGGTTCAAATCCCACTTGCTGAC--ATTTTTATT 4993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555060921483000