Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq138370 140 3e-28 seq38170 129 5e-25 seq31517 105 6e-18 seq40372 98.7 8e-16 >seq138370 Length=13449 Score = 140 bits (154), Expect = 3e-28 Identities = 170/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273 || |||||||||| |||||||| || | ||||| || || ||||||||||||| || | Sbjct 4606 TACAGATGCAAATCTTTGTTAAGACCCTCACCGGAAAGACAATCACTCTTGAAGTCGAGA 4665 Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333 |||| || | ||| | |||| || || |||||||| || || |||||||| | Sbjct 4666 GTTCCGACACAATAGACAACGTCAAGGCCAAGATCCAAGACAAAGAAGGCATTCCACCAG 4725 Query 22334 ATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATT 22393 | || ||| | ||||| |||||||| || ||| | || || ||| || | |||||| Sbjct 4726 ACCAGCAAAGACTTATCTTTGCCGGAAAGCAGCTTGAAGACGGCCGTACTTTAGCCGATT 4785 Query 22394 ACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||| || ||||||||||||||| | ||| | ||| | |||| | ||||| Sbjct 4786 ACAATATCCAAAAAGAATCCACCCTTCATCTTGTTCTCAGATTAAGAGGAGG 4837 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| ||||| ||||| || | ||||| ||||| ||||| | ||||| |||| | | Sbjct 4838 GATGCAGATTTTCGTTAAGACCCTCACCGGAAAAACCATCACTTTGGAAGTTGAAAGCTC 4897 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || ||| | || | ||||| || || |||||||| || || || || || || || Sbjct 4898 TGACACCATTGATAACGTCAAAGCTAAGATCCAAGACAAAGAAGGCATCCCCCCAGACCA 4957 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 |||| | || || || ||||| ||||| | ||||| ||| ||| | | |||||||| Sbjct 4958 ACAAAGGCTCATTTTCGCCGGAAAACAACTCGAGGACGGCCGAACCCTGGCTGATTACAA 5017 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGT 22427 ||| || ||||| ||||| | ||||| || Sbjct 5018 CATCCAGAAAGAGTCCACTCTCCATTTGGT 5047 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| ||||| || || ||||| || ||| | ||| | ||||| || | | | Sbjct 5067 ATGCAGATTTTCGTTAAGACATTGACCGGGAAGACGATTACTTTGGAAGTCGAGAGCTCG 5126 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | ||| || || ||||| ||||| || || ||||| |||||| Sbjct 5127 GACACCATTGATAACGTGAAAGCTAAGATCCAAGATAAGGAAGGAATCCCACCAGATCAA 5186 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| ||||| || |||||| | || ||| ||||| | | ||||||||| Sbjct 5187 CAGAGGCTTATCTTTGCTGGAAAACAGCTGGAAGATGGTCGCACTTTGGCTGATTACAAC 5246 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || ||||| ||| Sbjct 5247 ATCCAGAAGGAATCTACC 5264 >seq38170 Length=7308 Score = 129 bits (142), Expect = 5e-25 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || || || ||||| |||| | ||||| | || || || || ||| || Sbjct 6675 AAGATGCAGATCTTCGTGAAAACCCTAACTGAAAAAACCATAACCCTAGAGGTTGAATCC 6616 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | ||| || ||||| || || |||||||| || ||||| ||||| || Sbjct 6615 TCTGACACCATCGACAATGTCAAAGCCAAGATCCAAGACAAAGAAGGTATCCCACCGGAC 6556 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||||||||| || |||||||| |||||| | || | | | ||| | ||||| ||| Sbjct 6555 CAACAACGTCTCATCTTTGCCGGAAAACAGCTCGAAGGCGGCAGAACCCTATCCGACTAC 6496 Query 22396 AACATTCAAAAAGAATCCACC 22416 ||||| || || ||||||||| Sbjct 6495 AACATCCAGAAGGAATCCACC 6475 >seq31517 Length=16670 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || ||||| || | || || || || | ||| | ||||| |||| | | Sbjct 2795 ATGCAAATCTTCGTTAAGACCCTGACTGGAAAGACCATAACTTTGGAAGTTGAAAGCTCG 2854 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | ||| || || ||||| ||||| |||||||| || || || Sbjct 2855 GATACCATTGATAACGTGAAAGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGACCAG 2914 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||||||||||||| | || || ||| || | |||| || ||| Sbjct 2915 CAGAGGTTGATCTTTGCCGGCAAACAGCTTGAAGACGGCCGTACTCTAGCCGACTATAAC 2974 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || ||||| ||| | || || ||| | |||||| | || ||| Sbjct 2975 ATCCAGAAGGAATCAACCCTTCACTTGGTTCTTCGATTGAGAGGTGGT 3022 Score = 102 bits (112), Expect = 7e-17 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || || || ||||| |||| || || || | ||||| || || || | | Sbjct 2337 AGATGCAGATCTTCGTGAAAACCCTAACTGGAAAGACCATTACTCTCGAGGTCGAGAGCT 2396 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | ||||| | || | |||| ||||| ||||| ||||| || ||||| || |||| Sbjct 2397 CTGATACAATTGATAACGTCAAGGCCAAAATCCAAGATAAGGAAGGAATTCCTCCAGATC 2456 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | ||| | | || |||||||| || || | ||||| ||| || | ||||||||| Sbjct 2457 AGCAAAGATTGATCTTTGCCGGAAAGCAACTCGAGGACGGCCGTACTTTGGCCGATTACA 2516 Query 22397 ACATTCAAAAAGAATCCAC 22415 |||| |||||||| ||||| Sbjct 2517 ACATCCAAAAAGAGTCCAC 2535 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || ||||| || || ||||| || || ||||| | || || || | | Sbjct 3023 ATGCAGATCTTCGTTAAGACATTGACCGGAAAGACCATCACTTTGGAGGTTGAGAGTTCA 3082 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || | || ||| || ||||| ||||||||||| ||||| || || Sbjct 3083 GACACCATAGACAATGTTAAGGCAAAGATCCAAGATAAGGAGGGTATCCCACCAGACCAG 3142 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| || || ||| | || ||| | || | | || ||||| Sbjct 3143 CAGAGGTTAATCTTTGCTGGTAAGCAGCTTGAAGATGGAAGGACACTTGCTGACTACAAT 3202 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || |||||||| | ||||| ||| | |||||| | || ||| Sbjct 3203 ATTCAGAAGGAATCCACTCTTCATTTGGTTCTTCGATTGAGAGGTGGT 3250 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || |||||||| || || || || || || ||||| | || || || | | | Sbjct 3251 ATGCAGATCTTTGTTAAGACGTTGACTGGAAAGACAATCACTTTGGAGGTTGAGAGCTCT 3310 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | | || ||| || ||||||||||| || || ||||| ||||| Sbjct 3311 GATACTATCGATAACGTTAAGGCAAAGATCCAAGACAAGGAAGGGATCCCACCAGATCAG 3370 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| || || ||| | |||||| || || | | || |||||| Sbjct 3371 CAGAGATTGATCTTTGCAGGTAAGCAGCTCGAGGATGGTCGTACGCTTGCTGACTACAAC 3430 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATT 22436 ||||| || ||||| || |||| || ||| | ||||| Sbjct 3431 ATTCAGAAGGAATCGACTCTACACTTGGTTCTTCGATT 3468 >seq40372 Length=8222 Score = 98.7 bits (108), Expect = 8e-16 Identities = 110/143 (77%), Gaps = 3/143 (2%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||||||||||||||| || ||||| || ||| | || || ||||||||| Sbjct 949 AAGATTCAGGACAAGGAGGGTATTCCTCCAGATCAGCAGCGTTTGATCTTCGCCGGCAAA 890 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||||| || ||| | | ||| | | |||||||| | |||||| ||||| || | ||| Sbjct 889 CAGTTGGAAGAT-GCAGAACC-TAGCGGATTACAATA-TCAAAAGGAATCTACGTTGCAT 833 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 | ||| || ||||| | ||||| Sbjct 832 CTGGTTCTGAGATTGAGGGGAGG 810 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/197 (71%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| | || || ||||| | ||||| || || || | | Sbjct 1485 ATGCAGATCTTCGTGAAAACCCTTACTGGAAAAACCATTACTCTGGA-GTAGAGAGTTCT 1427 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || ||||| ||||| |||||||| || || ||||| || |||||| Sbjct 1426 GATACAATCGATAATGTCAAAGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGATCAA 1367 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || || ||||| |||||| || || | | ||| | | ||||| ||| Sbjct 1366 CAACGGCTCATCTTCGCCGGGAAACAGCTAAGAGACGGCAGAACCCTAGCTGATTATAAC 1307 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || ||||| || Sbjct 1306 ATCCAGAAGGAATCAAC 1290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418405276394875