Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq31517 104 2e-17 seq138370 84.2 2e-11 >seq31517 Length=16670 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || |||| ||||| || || || ||||| || |||| || || Sbjct 3023 ATGCAGATCTTCGTTAAGACATTGACCGGAAAGACCATCACTTTGGAGGTTGAGAGTTCA 3082 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || ||||| ||| || ||||| |||||| | || | |||| Sbjct 3083 GACACCATAGACAATGTTAAGGCAAAGATCCAAGATAAGGAGGGTATCCCACCAGACCAG 3142 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | ||||||||||| || || || |||||| || || | || || |||||| Sbjct 3143 CAGAGGTTAATCTTTGCTGGTAAGCAGCTTGAAGATGGAAGGACACTTGCTGACTACAAT 3202 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||||||||| ||||||||| |||| | || || |||| || Sbjct 3203 ATTCAGAAGGAATCCACTCTTCATTTGGTTCTTCGATTGAGAGGTGG 3249 >seq138370 Length=13449 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 |||||||| |||||||||||||| ||||| || |||||| ||| |||| |||||| Sbjct 5184 CAACAGAGGCTTATCTTTGCTGGAAAACAGCTGGAAGATGGTCGCACTTTGGCTGATTAC 5243 Query 22011 AATATTCAGAAGGAATCTACTCTTCA 22036 || || |||||||||||||| || || Sbjct 5244 AACATCCAGAAGGAATCTACCCTCCA 5269 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || || |||| |||||||| || || || ||||| |||| |||| | | Sbjct 5294 AATGCAGATTTTCGTTAAGACATTAACCGGAAAGACGATTACTTTGGAGGTGGAAAGCTC 5353 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || | ||| || ||| ||||| ||||| | || |||| Sbjct 5354 GGATACCATTGATAATGTGAAGGCGAAGATTCAGGATAAGGAGGGAATCCCACCGGACCA 5413 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| | ||||||||||| |||||| | |||||| | || | || ||||| || Sbjct 5414 GCAGAGGTTGATCTTTGCTGGTAAACAATTGGAAGATGGGAGGACACTTGCTGATTATAA 5473 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||| ||||| || || ||||||||| | || | ||| | || || || Sbjct 5474 TATCCAGAAAGAGTCCACTCTTCATCTTGTTCTTCGTCTTCGTGGTGG 5521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356996211660550