Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq138370 113 4e-20 seq38170 95.1 1e-14 >seq138370 Length=13449 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || ||||| | || || ||||| || ||||||||||| Sbjct 5068 ATACCACCACGAAGACGGAGGACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAATCA 5009 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || || || |||||||| || ||| | ||||| | |||||||| || Sbjct 5008 GCCAGGGTTCGGCCGTCCTCGAGTTGTTTTCCGGCGAAAATGAGCCTTTGTTGGTCTGGG 4949 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||||||||| ||||| ||| | | |||| |||||| | | ||| Sbjct 4948 GGGATGCCTTCTTTGTCTTGGATCTTAGCTTTGACGTTATCAATGGTGTCAGAGCTTTCA 4889 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | ||||| ||||| || || || || ||||||||||| Sbjct 4888 ACTTCCAAAGTGATGGTTTTTCCGGTGAGGGTCTTAACGAAAATCTGCAT 4839 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 |||||||| || || ||||||||||| || ||| ||| |||||| || ||||| ||| Sbjct 5263 GTAGATTCCTTCTGGATGTTGTAATCAGCCAAAGTGCGACCATCTTCCAGCTGTTTTCCA 5204 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | |||||| || || || || ||||| || || ||||| ||| Sbjct 5203 GCAAAGATAAGCCTCTGTTGATCTGGTGGGATTCCTTCCTTATCTTGGATCTTAGCTTTC 5144 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| | | ||||| |||| || | ||| || ||||||| || Sbjct 5143 ACGTTATCAATGGTGTCCGAGCTCTCGACTTCCAAAGTAATCGTCTTCCCGGTCAATGTC 5084 Query 114366 TTTACAAAAATCTGCAT 114382 || || ||||||||||| Sbjct 5083 TTAACGAAAATCTGCAT 5067 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || | || ||| | ||| | ||| | || ||||||||||| || ||||||||| Sbjct 4840 ATCCCTCCTCTTAATCTGAGAACAAGATGAAGGGTGGATTCTTTTTGGATATTGTAATCG 4781 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| |||||||| || || || || |||| || | || ||||| || Sbjct 4780 GCTAAAGTACGGCCGTCTTCAAGCTGCTTTCCGGCAAAGATAAGTCTTTGCTGGTCTGGT 4721 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||||||||| ||||| || | | || | ||||||| ||| Sbjct 4720 GGAATGCCTTCTTTGTCTTGGATCTTGGCCTTGACGTTGTCTATTGTGTCGGAACTCTCG 4661 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || || ||||| || || || ||||| || ||||| Sbjct 4660 ACTTCAAGAGTGATTGTCTTTCCGGTGAGGGTCTTAACAAAGATTTGCAT 4611 >seq38170 Length=7308 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||| ||| | || | |||| || ||||| || Sbjct 6476 GTGGATTCCTTCTGGATGTTGTAGTCGGATAGGGTTCTGCCGCCTTCGAGCTGTTTTCCG 6535 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||||||||| ||||||||||| || || ||||||||||| ||||| ||| Sbjct 6536 GCAAAGATGAGACGTTGTTGGTCCGGTGGGATACCTTCTTTGTCTTGGATCTTGGCTTTG 6595 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| | |||||| || || | ||| | ||||| | || || ||| Sbjct 6596 ACATTGTCGATGGTGTCAGAGGATTCAACCTCTAGGGTTATGGTTTTTTCAGTTAGGGTT 6655 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 6656 TTCACGAAGATCTGCAT 6672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418810395672900