Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq138370 134 3e-26 seq31517 134 3e-26 >seq138370 Length=13449 Score = 134 bits (148), Expect = 3e-26 Identities = 169/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || ||||||| ||| ||||| ||||||||||| || || Sbjct 5521 CCACCACGAAGACGAAGAACAAGATGAAGAGTGGACTCTTTCTGGATATTATAATCAGCA 5462 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | || ||||| |||||||| || || ||||||| | ||| || |||| Sbjct 5461 AGTGTCCTCCCATCTTCCAATTGTTTACCAGCAAAGATCAACCTCTGCTGGTCCGGTGGG 5402 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 ||||| || |||||||| || ||||| ||||| || || || | ||| ||| ||| Sbjct 5401 ATTCCCTCCTTATCCTGAATCTTCGCCTTCACATTATCAATGGTATCCGAGCT---TTCC 5345 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || | || |||||||| ||||| | ||||| ||||| ||||||||| Sbjct 5344 ACCTCCAAAGTAATCGTCTTTCCGGTTAATGTCTTAACGAAAATCTGCATT 5294 Score = 132 bits (146), Expect = 1e-25 Identities = 147/195 (75%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || || || || | ||||| || ||||| | |||||||| || || Sbjct 5258 TTCCTTCTGGATGTTGTAATCAGCCAAAGTGCGACCATCTTCCAGCTGTTTTCCAGCAAA 5199 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| || | ||||||| |||||||||||| ||||| ||||| || ||||||||||| Sbjct 5198 GATAAGCCTCTGTTGATCTGGTGGGATTCCTTCCTTATCTTGGATCTTAGCTTTCACGTT 5139 Query 288402 TTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 || || | || |||| || ||||| | || |||||||||||||||| ||||| Sbjct 5138 ATCAATGGTGTCCGAGCTC---TCGACTTCCAAAGTAATCGTCTTCCCGGTCAATGTCTT 5082 Query 288459 GACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 5081 AACGAAAATCTGCAT 5067 Score = 122 bits (134), Expect = 2e-22 Identities = 159/219 (73%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 288258 TCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCC 288317 ||| || || ||||||| ||| ||||||||||||||| || ||||| | || || || Sbjct 4826 TCTGAGAACAAGATGAAGGGTGGATTCTTTTTGGATATTGTAATCGGCTAAAGTACGGCC 4767 Query 288318 GTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTT 288377 |||||| | || ||||| || ||||| || | || || ||| || |||||||| Sbjct 4766 GTCTTCAAGCTGCTTTCCGGCAAAGATAAGTCTTTGCTGGTCTGGTGGAATGCCTTCTTT 4707 Query 288378 ATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG---CTCGATTCTACTTCGAGCGT 288434 || ||||| || || || ||||| ||||| | ||| ||| || ||||| || || Sbjct 4706 GTCTTGGATCTTGGCCTTGACGTTGTCTATTGTGTCGGAACTC---TCGACTTCAAGAGT 4650 Query 288435 GATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| ||||| ||||| || ||||| || || || ||||| Sbjct 4649 GATTGTCTTTCCGGTGAGGGTCTTAACAAAGATTTGCAT 4611 >seq31517 Length=16670 Score = 134 bits (148), Expect = 3e-26 Identities = 150/198 (76%), Gaps = 12/198 (6%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||||||||| || ||||| || || || |||||||| | ||| ||||| ||||| Sbjct 2758 TTCCTTTTGGATATTGTAATCGGCTAGAGTACGACCGTCTTCGAGTTGCTTTCCGGCGAA 2699 Query 288342 GATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| | ||| || ||||| ||||||||| || |||||||| || |||||||| Sbjct 2698 GATCAATCTCTGCTGG---TCTGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCTTTCAC 2642 Query 288399 GTTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGT 288455 ||| || |||| || ||| || ||||| | ||||| ||||| ||||| || || Sbjct 2641 GTTATCGATAGTGTCAGAACTC---TCGACTTCCAAGGTGATTGTCTTTCCGGTGAGGGT 2585 Query 288456 CTTGACGAATATCTGCAT 288473 |||||||| || ||||| Sbjct 2584 TTTGACGAAGATTTGCAT 2567 Score = 122 bits (134), Expect = 2e-22 Identities = 148/199 (74%), Gaps = 12/199 (6%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| ||||||||||| || || || |||||||| | ||||| || || || Sbjct 2986 TTCCTTCTGGATGTTATAGTCGGCTAGAGTACGGCCGTCTTCAAGCTGTTTGCCGGCAAA 2927 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| | ||| || |||||| || ||||| ||||| ||||| || |||||||| Sbjct 2926 GATCAACCTCTGCTGG---TCTGGGGGAATACCTTCCTTATCTTGGATCTTGGCTTTCAC 2870 Query 288399 GTTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGT 288455 ||| || || | ||| ||| ||| ||||| | || || ||||| || ||||| || Sbjct 2869 GTTATCAATGGTATCCGAGCT---TTCAACTTCCAAAGTTATGGTCTTTCCAGTCAGGGT 2813 Query 288456 CTTGACGAATATCTGCATT 288474 ||| ||||| || |||||| Sbjct 2812 CTTAACGAAGATTTGCATT 2794 Score = 109 bits (120), Expect = 1e-18 Identities = 144/197 (73%), Gaps = 12/197 (6%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||||||||| || || ||||| | || || ||||| || | ||| ||||| || ||| Sbjct 2529 TCTTTTTGGATGTTGTAATCGGCCAAAGTACGGCCGTCCTCGAGTTGCTTTCCGGCAAAG 2470 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| | || || |||| || |||||||| ||||| |||||||| || || ||| Sbjct 2469 ATCAATCTTTGCTG---ATCTGGAGGAATTCCTTCCTTATCTTGGATTTTGGCCTTGACG 2413 Query 288400 TTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || | ||| |||| || || ||||| || || ||||| || || || || Sbjct 2412 TTATCAATTGTATCAGAGCTC---TCGACCTCGAGAGTAATGGTCTTTCCAGTTAGGGTT 2356 Query 288457 TTGACGAATATCTGCAT 288473 || ||||| |||||||| Sbjct 2355 TTCACGAAGATCTGCAT 2339 Score = 109 bits (120), Expect = 1e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || | |||| || ||| || || ||||| ||||| || Sbjct 3705 CCACCACGAAGACGAAGAACCAAGTGAAGGGTTGATTCCTTCTGAATATTGTAGTCAGCA 3646 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | || || || || ||||||| | ||| ||| |||| Sbjct 3645 AGGGTACGGCCGTCCTCGAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCCGGTGGG 3586 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG---CTCGATTCT 288423 || ||||| |||||||| || || || || || || || |||| ||| ||| || Sbjct 3585 ATCCCTTCCTTATCCTGAATCTTTGCCTTGACATTGTCAATAGTATCCGAACTC---TCC 3529 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||||| |||||||| ||||||||||| || || |||||||| Sbjct 3528 ACCTCCAAAGTGATGGTCTTCCCAGTCAGAGTCTTCACAAAGATCTGCAT 3479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1175746214188850