Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq138370 123 2e-23 seq31517 123 2e-23 >seq138370 Length=13449 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| || || ||||||| || ||||||||||| || |||||||| || | || || Sbjct 4828 AATCTGAGAACAAGATGAAGGGTGGATTCTTTTTGGATATTGTAATCGGCTAAAGTACGG 4769 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 |||||||||||||||| |||||| | || || | |||||||| || ||||| |||||| Sbjct 4768 CCGTCTTCAAGCTGCTTTCCGGCAAAGATAAGTCTTTGCTGGTCTGGTGGAATGCCTTCT 4709 Query 64346 TTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTT 64405 || ||||| || || ||| || || | ||| || || ||||| | ||| Sbjct 4708 TTGTCTTGGATCTTGGCCTTGACGTTGTCTATTGTGTCGGAACTCTCGACTTCAAGAGTG 4649 Query 64406 ACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | ||||| ||||| | || || || || |||||||| Sbjct 4648 ATTGTCTTTCCGGTGAGGGTCTTAACAAAGATTTGCAT 4611 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| || || | || ||||| || || ||||||||||| || | ||||| | || Sbjct 5279 AAGCACAAGGTGGAGGGTAGATTCCTTCTGGATGTTGTAATCAGCCAAAGTGCGACCATC 5220 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| ||||| || || ||| | || |||| ||| || || || || |||||||| || || Sbjct 5219 TTCCAGCTGTTTTCCAGCAAAGATAAGCCTCTGTTGATCTGGTGGGATTCCTTCCTTATC 5160 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 ||| | | || ||||| || || | || || | || ||||| | ||| | | Sbjct 5159 TTGGA-TCTTAGCTTTCACGTTATCAATGGTGTCCGAGCTCTCGACTTCCAAAGTAATCG 5101 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| |||||||| || || |||||||| ||||| Sbjct 5100 TCTTCCCGGTCAATGTCTTAACGAAAATCTGCAT 5067 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || ||||||||||| || | ||| || |||| || || || || ||| Sbjct 5035 GTGGACTCTTTCTGGATGTTGTAATCAGCCAGGGTTCGGCCGTCCTCGAGTTGTTTTCCG 4976 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || ||||||||| || ||||| || || || |||||||| ||||| | | || ||||| Sbjct 4975 GCGAAAATGAGCCTTTGTTGGTCTGGGGGGATGCCTTCTTTGTCTTGGA-TCTTAGCTTT 4917 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 || || | || ||| | || ||||| | ||| | ||| || ||||| | || Sbjct 4916 GACGTTATCAATGGTGTCAGAGCTTTCAACTTCCAAAGTGATGGTTTTTCCGGTGAGGGT 4857 Query 64426 TTTTACGAAAATTTGCAT 64443 || |||||||| ||||| Sbjct 4856 CTTAACGAAAATCTGCAT 4839 >seq31517 Length=16670 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || | ||||| ||| || | |||| || ||||| || || ||||| || || || Sbjct 3022 ACCACCTCTCAATCGAAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTATAGTCGGC 2963 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || ||||||||||||| ||||||||| | || | || ||||||||| || || Sbjct 2962 TAGAGTACGGCCGTCTTCAAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGG 2903 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 ||| ||||| || ||||| | | || ||||| || || | ||||| | || | Sbjct 2902 AATACCTTCCTTATCTTGGA-TCTTGGCTTTCACGTTATCAATGGTATCCGAGCTTTCAA 2844 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||| | ||||| |||||| || |||| || || ||||| ||||||||| Sbjct 2843 CTTCCAAAGTTATGGTCTTTCCAGTCAGGGTCTTAACGAAGATTTGCATT 2794 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || | |||||| || || || || | || || |||||||| ||||||||||| || Sbjct 2565 CCTCCTCTCAATCTGAGGACAAGGTGGAGTGTGGACTCTTTTTGGATGTTGTAATCGGCC 2506 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || |||| || || ||||| |||||| | || | | ||||| || |||||| Sbjct 2505 AAAGTACGGCCGTCCTCGAGTTGCTTTCCGGCAAAGATCAATCTTTGCTGATCTGGAGGA 2446 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 |||||||| || ||||| ||||| ||| || || | ||||||| | || || Sbjct 2445 ATTCCTTCCTTATCTTGGATTTTGGCCTTGACGTTATCAATTGTATCAGAGCTCTCGACC 2386 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | |||||| || || | ||||| ||||| || ||||| Sbjct 2385 TCGAGAGTAATGGTCTTTCCAGTTAGGGTTTTCACGAAGATCTGCAT 2339 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || | ||||| ||| || | ||||| || ||||| || ||||| ||||| || || Sbjct 3250 ACCACCTCTCAATCGAAGAACCAAATGAAGAGTGGATTCCTTCTGAATATTGTAGTCAGC 3191 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || | | |||||||||||||| || ||| | || | || ||||||||| || || Sbjct 3190 AAGTGTCCTTCCATCTTCAAGCTGCTTACCAGCAAAGATTAACCTCTGCTGGTCTGGTGG 3131 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || ||||| || ||| ||| ||| || | || || || || Sbjct 3130 GATACCCTCCTTATCTTGGATCTTTGCCTTAACATTGTCTATGGTGTCTGAACTCTCAAC 3071 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | |||||| |||||||| || || ||||| || ||||| Sbjct 3070 CTCCAAAGTGATGGTCTTTCCGGTCAATGTCTTAACGAAGATCTGCAT 3023 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 |||| ||| || | || | |||||||| || ||||||||||| || || | || || Sbjct 3468 AATCGAAGAACCAAGTGTAGAGTCGATTCCTTCTGAATGTTGTAGTCAGCAAGCGTACGA 3409 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | || || |||||||| || ||| | || | | |||||| || || || || ||||| Sbjct 3408 CCATCCTCGAGCTGCTTACCTGCAAAGATCAATCTCTGCTGATCTGGTGGGATCCCTTCC 3349 Query 64346 TTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTT 64405 || ||||| || ||| ||| || || | |||||| | || || || | ||| Sbjct 3348 TTGTCTTGGATCTTTGCCTTAACGTTATCGATAGTATCAGAGCTCTCAACCTCCAAAGTG 3289 Query 64406 ACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | ||||| || ||||| || || || || || ||||| Sbjct 3288 ATTGTCTTTCCAGTCAACGTCTTAACAAAGATCTGCAT 3251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 498029854323000