Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq31517 107 1e-18 seq40372 96.9 2e-15 >seq31517 Length=16670 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||| || | || || |||||||| || || ||||| || ||||||||| Sbjct 2793 CCTCCTCTCAACCTGAGGACCAAGTGAAGGGTCGATTCCTTTTGGATATTGTAATCGGCT 2734 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | ||||||| | ||| || || ||| | ||||| | ||| ||||| || Sbjct 2733 AGAGTACGACCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCTGGAGGG 2674 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||||||| || ||| ||| || | || ||||| || | | || || Sbjct 2673 ATTCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTATCGATAGTGTCAGAACTCTCGACT 2614 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || ||||| || || || || || || ||||| || || |||||||| Sbjct 2613 TCCAAGGTGATTGTCTTTCCGGTGAGGGTTTTGACGAAGATTTGCAT 2567 Score = 82.4 bits (90), Expect = 5e-11 Identities = 163/240 (68%), Gaps = 1/240 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||||| | || | || || || || |||||||| |||||||||||| Sbjct 2565 CCTCCTCTCAATCTGAGGACAAGGTGGAGTGTGGACTCTTTTTGGATGTTGTAATCGGCC 2506 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | |||| || | ||| || || || | ||||| | || || || ||| Sbjct 2505 AAAGTACGGCCGTCCTCGAGTTGCTTTCCGGCAAAGATCAATCTTTGCTGATCTGGAGGA 2446 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || |||||| || || | || || ||||| | || || Sbjct 2445 ATTCCTTCCTTATCTTGGATTTTGGCCTTGACGTTATCAATTGTATCAGAGCTCTCGACC 2386 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATAT-TTGAAATAAA 15188 || | |||||||| || || || || ||||| || || || ||||| | |||| ||||| Sbjct 2385 TCGAGAGTAATGGTCTTTCCAGTTAGGGTTTTCACGAAGATCTGCATCTGTTGACATAAA 2326 >seq40372 Length=8222 Score = 96.9 bits (106), Expect = 2e-15 Identities = 165/231 (71%), Gaps = 9/231 (4%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-G 15006 |||| || | |||||| | ||| | ||| | ||||| || ||||| || |||||||| | Sbjct 808 TGCCTCCCCTCAATCTCAGAACCAGATGCAACGTAGATTCCTTTTG-ATATTGTAATCCG 866 Query 15007 CTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTT 15066 || | |||| || ||||| || |||||||| ||| | ||||||||||| || || Sbjct 867 CTAGG--TTCT-GCATCTTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGATCTGGA 923 Query 15067 GGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 ||||| || |||||||| ||| ||| || || || ||| ||||| | |||| Sbjct 924 GGAATACCCTCCTTGTCCTGAATCTTGGCCTT--CACGTTATATTGTATCAGAACTTTCA 981 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || ||||| ||||| || || | | ||| || || || |||||| Sbjct 982 ACCTCCAACGTAAT-GTTTTTCCCGTTA-ATGTTTCACGAAGATCTGCATA 1030 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/212 (71%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||||| || || || || || ||||| ||||| ||| || |||| ||||| || || Sbjct 1284 TGAAGAGTTGATTCCTTCTGGATGTTATAATCAGCT-AGGGTTCTGCCGTCTCTTAGCTG 1342 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||| || ||| | || | || ||||| || ||||| ||||| ||||| ||||| Sbjct 1343 TTTCCCGGCGAAGATGAGCCGTTGTTGATCTGGAGGAATGCCTTCTTTGTCTTGGATTTT 1402 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | ||| ||| | || || ||||| | | ||||| || | ||||||||||| || || Sbjct 1403 GGCTTTGACATTATCGATTGTATCAGAACTCTCTAC-TCCAGAGTAATGGTTTTTCCAGT 1461 Query 15153 CAGAGTTTTTACAAAAATTTGCATATTTGAAA 15184 || ||||| || || || |||||| |||||| Sbjct 1462 AAGGGTTTTCACGAAGATCTGCATACTTGAAA 1493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356265720993875