Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq31517 120 3e-22 seq138370 107 2e-18 seq40372 91.5 1e-13 >seq31517 Length=16670 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || || || ||||| |||||||||||| | | || ||| || || Sbjct 2775 ACCAAGTGAAGGGTCGATTCCTTTTGGATATTGTAATCGGCTAGAGTACGACCGTCTTCG 2716 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 || || ||||| ||| ||||||||| |||||| || ||||| || || ||||||||| | Sbjct 2715 AGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCTGGAGGGATTCCTTCCTTGTCCTGG 2656 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || || | | |||| ||||| | |||||||||||| | ||| | || || Sbjct 2655 ATCTTGGCTTTCACGTTATCGATAGTGTCAGAACTCTCGACTTCCAAGGTGATTGTCTTT 2596 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| || ||||| || || || ||||| Sbjct 2595 CCGGTGAGGGTTTTGACGAAGATTTGCAT 2567 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||||||||| || ||||||||| ||| || || || || || || ||||| Sbjct 2535 GTGGACTCTTTTTGGATGTTGTAATCGGCCAAAGTACGGCCGTCCTCGAGTTGCTTTCCG 2476 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || ||||||||| |||||||| ||||| || || ||||| || |||||| |||| Sbjct 2475 GCAAAGATCAATCTTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGGATTTTGGCCTTG 2416 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | || || | |||||||| |||| || | || || || || || ||| Sbjct 2415 ACGTTATCAATTGTATCAGAGCTCTCGACCTCGAGAGTAATGGTCTTTCCAGTTAGGGTT 2356 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 2355 TTCACGAAGATCTGCAT 2339 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || || || || ||||||||||| || | Sbjct 3705 CCACCACGAAGACGAAGAACCAAGTGAAGGGTTGATTCCTTCTGAATATTGTAGTCAGCA 3646 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| || ||||| ||||||| | ||||||||| || || Sbjct 3645 AGGGTACGGCCGTCCTCGAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCCGGTGGG 3586 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||| ||| ||| | | || ||||| | || | || |||| |||||| || Sbjct 3585 ATCCCTTCCTTATCC-TGAATCTTTGCCTTGACATTGTCAATAGTATCCGAACTCTCCAC 3527 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || || |||||||| || ||||| |||||||| Sbjct 3526 CTCCAAAGTGATGGTCTTCCCAGTCAGAGTCTTCACAAAGATCTGCAT 3479 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | ||||| | |||||||| | || || || || ||||||||||| || | Sbjct 3249 CCACCTCTCAATCGAAGAACCAAATGAAGAGTGGATTCCTTCTGAATATTGTAGTCAGCA 3190 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | ||| || ||||| || ||||| |||| || | |||||| || || || Sbjct 3189 AGTGTCCTTCCATCTTCAAGCTGCTTACCAGCAAAGATTAACCTCTGCTGGTCTGGTGGG 3130 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||| || ||| || ||| | | || | |||||| | |||||| || Sbjct 3129 ATACCCTCCTTATCTTGGATCTTTGCCTTAACATTGTCTATGGTGTCTGAACTCTCAACC 3070 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || ||||||| || || || || |||||||| Sbjct 3069 TCCAAAGTGATGGTCTTTCCGGTCAATGTCTTAACGAAGATCTGCAT 3023 >seq138370 Length=13449 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| || || || || |||||||| ||| |||||| ||| || |||||||||||| Sbjct 5263 GTAGATTCCTTCTGGATGTTGTAATCAGCCAAAGTGCGACCATCTTCCAGCTGTTTTCCA 5204 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | | ||| ||||| || || || || ||||| || ||| || || Sbjct 5203 GCAAAGATAAGCCTCTGTTGATCTGGTGGGATTCCTTCCTTATCTTGGATCTTAGCTTTC 5144 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||||| ||||||||||| | || | ||| || ||||||| || Sbjct 5143 ACGTTATCAATGGTGTCCGAGCTCTCGACTTCCAAAGTAATCGTCTTCCCGGTCAATGTC 5084 Query 127097 TTTACAAAAATCTGCAT 127113 || || ||||||||||| Sbjct 5083 TTAACGAAAATCTGCAT 5067 Score = 98.7 bits (108), Expect = 9e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || |||||||| |||||||||||| | | || || || || ||||| ||||| Sbjct 4807 GTGGATTCTTTTTGGATATTGTAATCGGCTAAAGTACGGCCGTCTTCAAGCTGCTTTCCG 4748 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | || ||||| || || || ||||| || ||||| ||| || |||| Sbjct 4747 GCAAAGATAAGTCTTTGCTGGTCTGGTGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTG 4688 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | ||||| | | ||||| | |||||||||||| | || | || || ||||| || || Sbjct 4687 ACGTTGT-CTATTGTGTCGGAACTCTCGACTTCAAGAGTGATTGTCTTTCCGGTGAGGGT 4629 Query 127096 TTTTACAAAAATCTGCAT 127113 || ||||| || ||||| Sbjct 4628 CTTAACAAAGATTTGCAT 4611 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||||| | || |||||||| || || |||||||| || Sbjct 5065 CCACCACGAAGACGGAGGACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGCC 5006 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || || |||||||| ||| | || | | || || || || || Sbjct 5005 AGGGTTCGGCCGTCCTCGAGTTGTTTTCCGGCGAAAATGAGCCTTTGTTGGTCTGGGGGG 4946 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| || ||||| ||| || |||| | || | |||||| | || || ||| Sbjct 4945 ATGCCTTCTTTGTCTTGGATCTTAGCTTTGACGTTATCAATGGTGTCAGAGCTTTCAACT 4886 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||||| ||||| || || || || ||||||||||| Sbjct 4885 TCCAAAGTGATGGTTTTTCCGGTGAGGGTCTTAACGAAAATCTGCAT 4839 >seq40372 Length=8222 Score = 91.5 bits (100), Expect = 1e-13 Identities = 98/126 (78%), Gaps = 3/126 (2%) Strand=Plus/Plus Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955 |||| || |||| ||| | |||||| || |||||| |||||||||| | | || | Sbjct 819 AATCTCAGAACCAGATGCAACGTAGATTCCTTTTGA-TATTGTAATCCGCTAG-GTTCT- 875 Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015 | ||| || | |||||| || ||| ||||||| ||||||||||| ||||| || |||||| Sbjct 876 GCATCTTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCCTCC 935 Query 127016 TTGTCC 127021 |||||| Sbjct 936 TTGTCC 941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473963892258000