Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq138370 118 1e-21 seq31517 100 3e-16 seq40372 96.9 3e-15 >seq138370 Length=13449 Score = 118 bits (130), Expect = 1e-21 Identities = 159/215 (74%), Gaps = 10/215 (5%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG-CTGACGGTTTTAGAATCGTC 45190 || ||||| || || ||||| ||||||||||| |||||| || | | || |||| Sbjct 4819 ACAAGATGAAGGGTGGATTCTTTTTGGATATTGTAATCGGCTAAAG----TACGGCCGTC 4764 Query 45191 --CAAT-TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 ||| || ||||| || | || | || ||||||||| || |||||||||||||| || Sbjct 4763 TTCAAGCTGCTTTCCGGCAAAGATAAGTCTTTGCTGGTCTGGTGGAATGCCTTCTTTGTC 4704 Query 45248 TTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCG 45306 ||| || || |||| || | |||| ||||||||| ||||||||| ||||| | | Sbjct 4703 TTGGATCTTGGCCTTGA-CGTTGTCTATTGTGTCGGAACTCTCGACTTCAAGAGTGATTG 4645 Query 45307 TTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | || ||||| || || || ||||| ||||||||| Sbjct 4644 TCTTTCCGGTGAGGGTCTTAACAAAGATTTGCATC 4610 Score = 86.0 bits (94), Expect = 6e-12 Identities = 144/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 ||| || || || || || ||||| || ||||| | |||| || || | ||| Sbjct 5042 ATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGCCAGGGTTCGGCCGTCCTCGAGTTG 4983 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 |||||| ||| | || | | ||| ||||| || || ||||||||||| ||||| || || Sbjct 4982 TTTTCCGGCGAAAATGAGCCTTTGTTGGTCTGGGGGGATGCCTTCTTTGTCTTGGATCTT 4923 Query 45257 TTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGG 45315 ||||| || | || | |||||| || || ||||| | ||| | ||||| |||| Sbjct 4922 AGCTTTGA-CGTTATCAATGGTGTCAGAGCTTTCAACTTCCAAAGTGATGGTTTTTCCGG 4864 Query 45316 TTAGAGTTTTTACAAAAATTTGCATC 45341 | || || || || ||||| |||||| Sbjct 4863 TGAGGGTCTTAACGAAAATCTGCATC 4838 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || || || || |||||||||||||| | || | ||| ||| Sbjct 5503 ACAAGATGAAGAGTGGACTCTTTCTGGATATTATAATCAGCAAGTGTCCTCCCATCTTCC 5444 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 |||||||| || || | ||||| | ||||||||||| || || || || ||||| ||| Sbjct 5443 AATTGTTTACCAGCAAAGATCAACCTCTGCTGGTCCGGTGGGATTCCCTCCTTATCCTGA 5384 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || || | || | ||| || || || || || | ||||| ||| || Sbjct 5383 ATCTTCGCCTTCACATTATCAATGGTATCCGAGCTTTCCACCTCCAAAGTAATCGTCTTT 5324 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||| || || || ||||| ||||| Sbjct 5323 CCGGTTAATGTCTTAACGAAAATCTGCAT 5295 >seq31517 Length=16670 Score = 100 bits (110), Expect = 3e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | | ||| | || | || || || ||||||||||||||||| |||||| Sbjct 2796 ATTCCTCCTCTCAACCTGAGGACCAAGTGAAGGGTCGATTCCTTTTGGATATTGTAATCG 2737 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | || || | ||| ||||| ||| | ||||||| |||||||| || Sbjct 2736 GCTAGAGTACGACCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCTGGA 2677 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || ||||| || || || || || ||| | || | || | ||||| ||| ||| Sbjct 2676 GGGATTCCTTCCTTGTCCTGGATCTTGGCTTTCA-CGTTATCGATAGTGTCAGAACTCTC 2618 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 |||||| | || | || || ||||| || ||||| || || ||||||||| Sbjct 2617 GACTTCCAAGGTGATTGTCTTTCCGGTGAGGGTTTTGACGAAGATTTGCATC 2566 >seq40372 Length=8222 Score = 96.9 bits (106), Expect = 3e-15 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC- 45169 || ||||| ||||| | | || || || || ||||||||||| ||||| |||||||| Sbjct 1258 ATACCTCCACGGAGGCG-AGGACGAGGTGAAGAGTTGATTCCTTCTGGATGTTATAATCA 1316 Query 45170 GCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGG 45229 ||| | |||| | || | ||||| || ||| | || | ||||| || || || Sbjct 1317 GCT-AGGGTTCTGCCGTCTCTTAGCTGTTTCCCGGCGAAGATGAGCCGTTGTTGATCTGG 1375 Query 45230 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTC 45289 |||||||||||||| ||||| ||||| ||||| || | || || ||| ||| Sbjct 1376 AGGAATGCCTTCTTTGTCTTGGATTTTGGCTTTGACATTATCGATTGTATCAGAACTCTC 1435 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||||| ||||| || || || ||||| || || || ||||| Sbjct 1436 TAC-TCCAGAGTAATGGTTTTTCCAGTAAGGGTTTTCACGAAGATCTGCAT 1485 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/132 (77%), Gaps = 5/132 (4%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAAT-CGCTGACGGTTTTAGA 45184 |||| || ||||||| ||| |||||||||| |||||| |||| |||| |||| | | Sbjct 822 CTCAGAACCAGATGCAACGTAGATTCCTTTT-GATATTGTAATCCGCT--AGGTTCT-GC 877 Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| ||||| ||||| || ||| | ||||| || ||||| || || ||||| || || || Sbjct 878 ATCTTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCCTCCTT 937 Query 45245 ATCTTGAATTTT 45256 || ||||| || Sbjct 938 GTCCTGAATCTT 949 Score = 82.4 bits (90), Expect = 7e-11 Identities = 169/237 (71%), Gaps = 12/237 (5%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || ||||| |||||||||| ||| ||||| || || ||| Sbjct 1028 ATACCACCACGGAGACGAAGGACGAGATGAAGCGTTGATT-CTTCTGGATGTTGTAGTCG 1086 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCC-TGCGTATATCAATCGTTGCTG-GTCCG 45228 || |||| | || ||||| || ||||| ||| | || | || ||||| |||| Sbjct 1087 CT--AGGTTCTGCCGTCTTCCAACTGCTTTCCGCGCGAAGATGAGCCGCTGCTGAATCCG 1144 Query 45229 -GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACG-GTGTCGGAAG 45285 | ||||| ||||||| || || || || |||| || | |||| | ||||||||| Sbjct 1145 TGTGGAAT-ACTTCTTTGTCCTGGATCTTGGCCTTGA-CGTTGTCTATGCGTGTCGGAAC 1202 Query 45286 ACTCGACTTCGAGAGTAACCG-TTTTGCCGGTTAGAGTTTTTAC-AAAAATTTGCAT 45340 |||||| || | |||| | | ||||||||||| ||||| || ||||| ||||| Sbjct 1203 TCTCGACCTCCAAGGTAATGGCTCTTGCCGGTTAGGGTTTTGACGGAAAATCTGCAT 1259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450542240907000