Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq31517 134 3e-26 seq138370 125 2e-23 seq40372 111 4e-19 seq38170 111 4e-19 >seq31517 Length=16670 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 199415 CTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCA 199474 || ||||| | ||| || ||||| |||||||||| ||||| || || | ||| | || Sbjct 2781 CTGAGGACCAAGTGAAGGGTCGATTCCTTTTGGATATTGTAATCGGCTAGAGTACGACCG 2722 Query 199475 TCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGC 199534 ||||| || ||||||||||||||||| | | ||||||||| ||| |||||||| Sbjct 2721 TCTTCGAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCTGGAGGGATTCCTTCCTTG 2662 Query 199535 TCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATC 199594 ||||| ||||| |||||| |||| ||||| | | || || ||||| ||||| Sbjct 2661 TCCTGGATCTTGGCTTTCACGTTATCGATAGTGTCAGAACTCTCGACTTCCAAGGTGATT 2602 Query 199595 GTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| ||||| || || ||||| Sbjct 2601 GTCTTTCCGGTGAGGGTTTTGACGAAGATTTG 2570 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| |||||||||||||| || ||||| ||||||| |||||| || |||||||| | || Sbjct 2554 TCTGAGGACAAGGTGGAGTGTGGACTCTTTTTGGATGTTGTAATCGGCCAAAGTACGGCC 2495 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 || || || ||||||||||| ||||| | | ||||| || ||| ||||||||| Sbjct 2494 GTCCTCGAGTTGCTTTCCGGCAAAGATCAATCTTTGCTGATCTGGAGGAATTCCTTCCTT 2435 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || || || || ||| ||| || | || || | | || || || | || || Sbjct 2434 ATCTTGGATTTTGGCCTTGACGTTATCAATTGTATCAGAGCTCTCGACCTCGAGAGTAAT 2375 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || |||||||| || || || Sbjct 2374 GGTCTTTCCAGTTAGGGTTTTCACGAAGATCTG 2342 Score = 100 bits (110), Expect = 7e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || ||||| || ||||| || | ||||||||||| | |||||||||||||| |||||| Sbjct 3225 TGAAGAGTGGATTCCTTCTGAATATTGTAGTCAGCAAGTGTCCTTCCATCTTCAAGCTGC 3166 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || || ||||| | | ||||||||| || || || || || || |||||| Sbjct 3165 TTACCAGCAAAGATTAACCTCTGCTGGTCTGGTGGGATACCCTCCTTATCTTGGATCTTT 3106 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| || || | |||||||| | || || ||||| ||||| ||||| || || Sbjct 3105 GCCTTAACATTGTCTATGGTGTCTGAACTCTCAACCTCCAAAGTGATGGTCTTTCCGGTC 3046 Query 199607 AGAGTTTTCACAAAAATTTG 199626 | || || || || || || Sbjct 3045 AATGTCTTAACGAAGATCTG 3026 Score = 96.9 bits (106), Expect = 8e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| || || || ||||| || | ||||||||||| | || Sbjct 3699 CGAAGACGAAGAACCAAGTGAAGGGTTGATTCCTTCTGAATATTGTAGTCAGCAAGGGTA 3640 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| || || ||||| | | |||||| ||||| || ||| Sbjct 3639 CGGCCGTCCTCGAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCCGGTGGGATCCCT 3580 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || |||||||||||| ||| || || | || || | | || || ||||| Sbjct 3579 TCCTTATCCTGAATCTTTGCCTTGACATTGTCAATAGTATCCGAACTCTCCACCTCCAAA 3520 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || ||||| |||||||| || || Sbjct 3519 GTGATGGTCTTCCCAGTCAGAGTCTTCACAAAGATCTG 3482 Score = 93.3 bits (102), Expect = 1e-13 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| |||||||| ||||| || | |||||||||||| | || | ||||| Sbjct 3462 AGAACCAAGTGTAGAGTCGATTCCTTCTGAATGTTGTAGTCAGCAAGCGTACGACCATCC 3403 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || ||||| | | |||||| || || || ||||| || Sbjct 3402 TCGAGCTGCTTACCTGCAAAGATCAATCTCTGCTGATCTGGTGGGATCCCTTCCTTGTCT 3343 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || |||||| ||| ||| |||| || || | | || || ||||| ||||| ||| Sbjct 3342 TGGATCTTTGCCTTAACGTTATCGATAGTATCAGAGCTCTCAACCTCCAAAGTGATTGTC 3283 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || ||||| || || Sbjct 3282 TTTCCAGTCAACGTCTTAACAAAGATCTG 3254 >seq138370 Length=13449 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||||||||| || || ||||| |||| |||||| ||||||||||| | |||||| Sbjct 5278 AGCACAAGGTGGAGGGTAGATTCCTTCTGGATGTTGTAATCAGCCAAAGTGCGACCATCT 5219 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||| ||||| || ||||| || | ||| || || || |||||||| || Sbjct 5218 TCCAGCTGTTTTCCAGCAAAGATAAGCCTCTGTTGATCTGGTGGGATTCCTTCCTTATCT 5159 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| || | |||||| | | || || ||||| || |||||| Sbjct 5158 TGGATCTTAGCTTTCACGTTATCAATGGTGTCCGAGCTCTCGACTTCCAAAGTAATCGTC 5099 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || || ||||| || Sbjct 5098 TTCCCGGTCAATGTCTTAACGAAAATCTG 5070 Score = 114 bits (126), Expect = 3e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| || ||||| || || || || || ||||||| ||||| || || ||||| | || Sbjct 4826 TCTGAGAACAAGATGAAGGGTGGATTCTTTTTGGATATTGTAATCGGCTAAAGTACGGCC 4767 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 ||||| |||||||||||||| ||||| || | |||||||| || ||| |||||| Sbjct 4766 GTCTTCAAGCTGCTTTCCGGCAAAGATAAGTCTTTGCTGGTCTGGTGGAATGCCTTCTTT 4707 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || || ||||| ||| ||| || | ||||| | | || || || | ||||| Sbjct 4706 GTCTTGGATCTTGGCCTTGACGTTGTCTATTGTGTCGGAACTCTCGACTTCAAGAGTGAT 4647 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| || || ||||| ||||| Sbjct 4646 TGTCTTTCCGGTGAGGGTCTTAACAAAGATTTG 4614 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| | |||||||| ||||| || |||| |||||| ||||||| || Sbjct 5059 CGAAGACGGAGGACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGCCAGGGTT 5000 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || || || ||||||||||| ||||| | || ||||| || || ||| Sbjct 4999 CGGCCGTCCTCGAGTTGTTTTCCGGCGAAAATGAGCCTTTGTTGGTCTGGGGGGATGCCT 4940 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || || ||||| || ||| || | |||||| | |||| || ||||| Sbjct 4939 TCTTTGTCTTGGATCTTAGCTTTGACGTTATCAATGGTGTCAGAGCTTTCAACTTCCAAA 4880 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || ||||| || || || ||||| || Sbjct 4879 GTGATGGTTTTTCCGGTGAGGGTCTTAACGAAAATCTG 4842 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || ||||| || ||||| ||||| || |||| || || ||||| | ||| Sbjct 5515 CGAAGACGAAGAACAAGATGAAGAGTGGACTCTTTCTGGATATTATAATCAGCAAGTGTC 5456 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || |||||||||| || || || || ||||| | | |||||||||||| ||||| Sbjct 5455 CTCCCATCTTCCAATTGTTTACCAGCAAAGATCAACCTCTGCTGGTCCGGTGGGATTCCC 5396 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| |||||| || | ||| || | |||| || ||||| Sbjct 5395 TCCTTATCCTGAATCTTCGCCTTCACATTATCAATGGTATCCGAGCTTTCCACCTCCAAA 5336 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || || | || || || ||||| || Sbjct 5335 GTAATCGTCTTTCCGGTTAATGTCTTAACGAAAATCTG 5298 Score = 91.5 bits (100), Expect = 3e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 200930 AAAAACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 200989 ||| ||||||||| |||||||||||| | ||||| || | ||||| ||||||||||| Sbjct 4732 AAAGACTTATCTTTGCCGGAAAGCAGCTTGAAGACGGCCGTACTTTAGCCGATTACAATA 4791 Query 200990 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 201024 |||| ||||| || || ||||| |||||| | ||| Sbjct 4792 TCCAAAAAGAATCCACCCTTCATCTTGTTCTCAGA 4826 >seq40372 Length=8222 Score = 111 bits (122), Expect = 4e-19 Identities = 161/220 (73%), Gaps = 7/220 (3%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGG-AGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||||| | ||| ||||||||| ||||| || ||||| || | || || ||||| ||||| Sbjct 591 CGAAGACGCAGCACAAGGTGGCAGAGTAGA-TCCTTCTGAATATTATAATCAGCTAAAGT 649 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || |||||||| |||||||| || || ||||| | | ||||| || || ||| || Sbjct 650 TCTACCATCTTCAAGCTGCTTCCCAGCAAAGATCAAAACGTGCTGATCAGGTGGAATCCC 709 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || | |||||||| ||| ||||||| || | ||||||| | || || ||||| Sbjct 710 TTTTA--TCCTGAAT-TTTGGCTTCACATTATCAATAGTGTCTGAGCTCTCAACCTCCAA 766 Query 199588 CGTGATCGTCTTACCCGTGAGA-GTTTTCACAAAAATTTG 199626 |||||| ||||| ||| | | || || |||||||| || Sbjct 767 CGTGATTGTCTT-CCCTTCTCATGTCTTGACAAAAATCTG 805 Score = 93.3 bits (102), Expect = 1e-13 Identities = 149/210 (71%), Gaps = 3/210 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| ||||| || ||||| |||| ||| || ||||| | || || || ||| Sbjct 1275 AGGACGAGGTGAAGAGTTGATTCCTTCTGGATGTTATAATCAGCTAGGGTTCTGCCGTCT 1334 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||| || |||||||||||||| || || || || ||| ||| |||||| || Sbjct 1335 CTTAGCTGTTTCCCGGCGAAGATGAGCCGTTGTTGATCTGGAGGAATGCCTTCTTTGTCT 1394 Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || || ||| || || || |||| || || | | ||||| |||| || || || Sbjct 1395 TGGAT-TTTGGCTTTGACATTATCGATTGTATCAGAACTCTCTAC-TCCAGAGTAATGGT 1452 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || |||||||| || || || Sbjct 1453 TTTTCCAGTAAGGGTTTTCACGAAGATCTG 1482 Score = 89.7 bits (98), Expect = 1e-12 Identities = 151/213 (71%), Gaps = 7/213 (3%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 |||||| || || || | || || |||||||| | ||||| || || | || | | Sbjct 821 TCTCAGAACCAGATGCAACGTAGATTCCTTTTG-ATATTGTAATCCGCTAGGTTC--TGC 877 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||||| ||| || ||||||||||| | ||||||||| || ||| ||| || || Sbjct 878 ATCTTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCCTCCTT 937 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 ||||||||||| ||||||| || | || || | |||| || |||||||| || Sbjct 938 GTCCTGAATCTTGGCCTTCACG--TTATATTGTATCAGAACTTTCAACCTCCAACGTAAT 995 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| | | |||||| || || || Sbjct 996 -GTTTTTCCCGTTA-ATGTTTCACGAAGATCTG 1026 >seq38170 Length=7308 Score = 111 bits (122), Expect = 4e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||||||||| || || ||||| |||| ||||||||| | | || || || || Sbjct 6461 AGGACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGATAGGGTTCTGCCGCCT 6520 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||| |||||||| ||||||||||| || |||||||| || |||||| || Sbjct 6521 TCGAGCTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCCGGTGGGATACCTTCTTTGTCT 6580 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| || || |||| |||||| | | ||| || || | || || || Sbjct 6581 TGGATCTTGGCTTTGACATTGTCGATGGTGTCAGAGGATTCAACCTCTAGGGTTATGGTT 6640 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || | || || |||||||| || || || Sbjct 6641 TTTTCAGTTAGGGTTTTCACGAAGATCTG 6669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1175015841949525