Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq31517 107 2e-18 seq138370 100 3e-16 seq40372 84.2 2e-11 >seq31517 Length=16670 Score = 107 bits (118), Expect = 2e-18 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||||||||| |||| |||||| || |||| ||||| ||||| |||||||| Sbjct 2757 TCCTTTTGGATATTGTAATCGGCTAGAGTACGACCGTCTTCGAGTTGCTTTCCGGCGAAG 2698 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| | ||||||||| | || | | ||||||||| |||||| || | | Sbjct 2697 ATCAATCTCTGCTGGTCTGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTA 2638 Query 46523 GCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTA 46579 | | ||||| ||| || || |||| ||||| || || || || || ||||| Sbjct 2637 TCGATAGTGTCAGAACTC---TCGACTTCCAAGGTGATTGTCTTTCCGGTGAGGGTTTTG 2581 Query 46580 ACAAAGATTTGCAT 46593 || ||||||||||| Sbjct 2580 ACGAAGATTTGCAT 2567 Score = 86.0 bits (94), Expect = 7e-12 Identities = 136/194 (70%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || ||||||||||| | || || || |||| ||||||||||| || || || Sbjct 3669 TCCTTCTGAATATTGTAGTCAGCAAGGGTACGGCCGTCCTCGAGCTGCTTACCAGCAAAG 3610 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| | |||||| || | || | | ||||| ||| ||||| ||||| | Sbjct 3609 ATCAACCTCTGCTGATCCGGTGGGATCCCTTCCTTATCCTGAATCTTTGCCTTGACATTG 3550 Query 46523 GCCACCGTGTCGCTCGA---TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTA 46579 | | || || ||| ||||| |||| |||||||| || || ||||| || || Sbjct 3549 TCAATAGTATC---CGAACTCTCCACCTCCAAAGTGATGGTCTTCCCAGTCAGAGTCTTC 3493 Query 46580 ACAAAGATTTGCAT 46593 |||||||| ||||| Sbjct 3492 ACAAAGATCTGCAT 3479 >seq138370 Length=13449 Score = 100 bits (110), Expect = 3e-16 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||||||||| | | || ||||| | || || |||||||||||||| |||| | Sbjct 4837 CCTCCTCTTAATCTGAGAACAAGATGAAGGGTGGATTCTTTTTGGATATTGTAATCGGCT 4778 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||| || |||| || |||||||| ||||| || || | | |||||||| | || Sbjct 4777 AAAGTACGGCCGTCTTCAAGCTGCTTTCCGGCAAAGATAAGTCTTTGCTGGTCTGGTGGA 4718 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCG---CTCGATTC 46542 | || || ||||| |||||| ||||| ||| | | | |||||| ||| || Sbjct 4717 ATGCCTTCTTTGTCTTGGATCTTGGCCTTGA-CGTTGTCTATTGTGTCGGAACTC---TC 4662 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | ||||| || || || || || || ||||||||||||||||| Sbjct 4661 GACTTCAAGAGTGATTGTCTTTCCGGTGAGGGTCTTAACAAAGATTTGCAT 4611 >seq40372 Length=8222 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/145 (74%), Gaps = 3/145 (2%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| || || | || ||||||||||| ||| |||||||| |||||||| || | Sbjct 808 TGCCTCCCCTCAATCTCAGAACCAGATGCAACGTAGATTCCTTTTG-ATATTGTAATCCG 866 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 ||| | || || || | ||| ||||||||||| ||||| |||||||| || | | Sbjct 867 CTAGGTTCTGCA--TCTTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAG 924 Query 46485 GCACGCTCTCCTTGTCCATGATCTT 46509 | | | |||||||||| ||||| Sbjct 925 GAATACCCTCCTTGTCCTGAATCTT 949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563411443509000