Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq40372 95.1 8e-15 seq138370 86.0 4e-12 >seq40372 Length=8222 Score = 95.1 bits (104), Expect = 8e-15 Identities = 164/231 (71%), Gaps = 13/231 (6%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || | ||| | ||| |||| |||||| || ||| ||||| ||||| ||||| || Sbjct 809 GCCTCCCCTCAATCTCAGAACCAGATGCAACGTAGATTCCTTTTG-ATATTGTAATCCGC 867 Query 39552 CAAAACGCGTTC---ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608 | |||| ||| ||||| ||||| ||| | || || |||||||||||||| | Sbjct 868 TAG-----GTTCTGCATCTTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGATCTGG 922 Query 39609 GGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTC 39668 || | || || ||||| | | | || | | ||| || ||| || | ||||| Sbjct 923 AGGAATACCCTCCTTGTC-CTGAATCTTGGCCTTCACGT-TATATTGTATCAGAACTTTC 980 Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||| |||| |||||| |||||||| | ||| |||||||||||||| Sbjct 981 AACCTCCAACGTAA-TGTTTTTCCCGTTAATG-TTTCACGAAGATCTGCAT 1029 >seq138370 Length=13449 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || |||||||| | |||| ||||| || || || ||||| ||| Sbjct 5065 CCACCACGAAGACGGAGGACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGCC 5006 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | || | || || | |||||| ||| | ||||| | | || || || | ||| Sbjct 5005 AGGGTTCGGCCGTCCTCGAGTTGTTTTCCGGCGAAAATGAGCCTTTGTTGGTCTGGGGGG 4946 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||||||||| || || ||| | | | | ||||| | |||||| || Sbjct 4945 ATGCCTTCTTTGTCTTGGATCTTAGCTTTGACGTTATCAATGGTGTCAGAGCTTTCAACT 4886 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||||| || ||||| || || | || || ||||| |||||||| Sbjct 4885 TCCAAAGTGATGGTTTTTCCGGTGAGGGTCTTAACGAAAATCTGCAT 4839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346274905412975