Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq138370 118 1e-21 seq31517 111 2e-19 seq38170 102 8e-17 seq40372 86.0 6e-12 >seq138370 Length=13449 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| || ||||||||||| | || || || | | Sbjct 4839 ATGCAGATTTTCGTTAAGACCCTCACCGGAAAAACCATCACTTTGGAAGTTGAAAGCTCT 4898 Query 38304 GACAGC-GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || |||| | |||| || |||| |||||||| || || ||| | ||||| Sbjct 4899 GACACCATTGATAACG-TCAAAGCTAAGATCCAAGACAAAGAAGGCATCCCCCCAGACCA 4957 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| ||||||||| ||| || ||||| || || |||| || ||||| || ||||| Sbjct 4958 ACAAAGGCTCATTTTCGCCGGAAAACAACTCGAGGACGGCCGAACCCTGGCTGATTACAA 5017 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| || || | || || |||||||| || ||| Sbjct 5018 CATCCAGAAAGAGTCCACTCTCCATTTGGTCCTCCGT 5054 >seq31517 Length=16670 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| ||||| || || || |||||| | || |||||| | Sbjct 2567 ATGCAAATCTTCGTCAAAACCCTCACCGGAAAGACAATCACCTTGGAAGTCGAGAGTTCT 2626 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | |||| || |||| ||||| || ||||| || | ||||| Sbjct 2627 GACACTATCGATAACG-TGAAAGCCAAGATCCAGGACAAGGAAGGAATCCCTCCAGACCA 2685 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | | || | ||| || || || || || |||| || || || ||| ||||| Sbjct 2686 GCAGAGATTGATCTTCGCCGGAAAGCAACTCGAAGACGGTCGTACTCTAGCCGATTACAA 2745 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| |||| || || ||||| || | |||||||| || Sbjct 2746 TATCCAAAAGGAATCGACCCTTCACTTGGTCCTCAGGTTGAGAGGAGG 2793 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| || || || || || || ||||| || | || || || | | Sbjct 2794 AATGCAAATCTTCGTTAAGACCCTGACTGGAAAGACCATAACTTTGGAAGTTGAAAGCTC 2853 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | | |||| | |||| || |||| || || || || |||||| | |||| Sbjct 2854 GGATACCATTGATAACG-TGAAAGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGACC 2912 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||| || | || | || ||||||||||| || |||| || || || |||||| | Sbjct 2913 AGCAGAGGTTGATCTTTGCCGGCAAACAGCTTGAAGACGGCCGTACTCTAGCCGACTATA 2972 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| |||||| | || || || ||||| || || |||||||| || Sbjct 2973 ACATCCAGAAGGAATCAACCCTTCACTTGGTTCTTCGATTGAGAGGTGG 3021 >seq38170 Length=7308 Score = 102 bits (112), Expect = 8e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| ||||| || || | |||||||| ||| | || || || || Sbjct 6675 AAGATGCAGATCTTCGTGAAAACCCTAACTGAAAAAACCATAACCCTAGAGGTTGAATCC 6616 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | |||| || |||| |||||||| || || || | ||| Sbjct 6615 TCTGACACCATCGACAATGTCAAAGCCAAGATCCAAGACAAAGAAGGTATCCCACCGGAC 6556 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 ||||| || ||||| | || || |||||||| || | || | ||||| ||||||| Sbjct 6555 CAACAACGTCTCATCTTTGCCGGAAAACAGCTCGAAGGCGGCAGAACCCTATCCGACTAC 6496 Query 38421 AACATCCAAAAGGAAGCGACGCTGCA 38446 |||||||| |||||| | || || || Sbjct 6495 AACATCCAGAAGGAATCCACCCTCCA 6470 >seq40372 Length=8222 Score = 86.0 bits (94), Expect = 6e-12 Identities = 160/222 (72%), Gaps = 10/222 (5%) Strand=Plus/Minus Query 38244 ATGCAAATATTC-GTAAAAACGCTCACGGGCAAAA-CCATCACCGTCGACGTCGAGGCCA 38301 ||||| || ||| || ||||| || || ||||| | |||| ||| | || |||||| Sbjct 1259 ATGCAGATTTTCCGTCAAAACCCTAACCGGCAAGAGCCATTACCTTGGAGGTCGAGAGTT 1200 Query 38302 CCGACA-GCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| || | | |||| | || | || |||| |||||||| | | | | | | || Sbjct 1199 CCGACACGCATAGACAACG-TCAAGGCCAAGATCCAGGACAAAGAAGTATTCCACACGGA 1141 Query 38360 C-CAACAGCGGCTCATTTACGCGGGCAAA-CAGCTGGACGACGAGCGCACCCTCAACGAC 38417 || ||||||||||| | |||| | ||| ||| |||| |||| || | ||| | |||| Sbjct 1140 TTCAGCAGCGGCTCATCTTCGCGCGGAAAGCAGTTGGAAGACG-GCAGAACCT-AGCGAC 1083 Query 38418 TACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||| || ||| | ||||| ||| | || || ||| Sbjct 1082 TACAACATCCAGAA-GAATCAACGCTTCATCTCGTCCTTCGT 1042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 498556147728000