Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq106419 143 3e-29 seq200694 89.7 6e-13 seq46817 89.7 6e-13 seq27346 89.7 6e-13 >seq106419 Length=70059 Score = 143 bits (158), Expect = 3e-29 Identities = 292/424 (69%), Gaps = 16/424 (4%) Strand=Plus/Minus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCAA 15975 ||||| || || | || || || || || | |||| |||||| |||||| || ||| Sbjct 23842 TCAAGAATGTCTGCACGGTTGGTAGCTGCAACCACAATAATACCAGTGTTTCCTT--CAA 23785 Query 15976 AACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATT---CGCTG 16032 | |||||||| ||||||||||||||||| | |||||||| | ||||||||| | || Sbjct 23784 AGCCATCCATTTCTGTCAAAAGCTGGTTCAGGGTTTGTTCTCTTTCATCATTACCCCCTC 23725 Query 16033 GCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 || ||||| | | |||| | || || |||||||| ||||||| || ||||| | Sbjct 23724 CAAT---ACCAGTCCCTCTTTGCCTCCCAACAGCATCAATTTCATCAACAAATACGATAC 23668 Query 16093 ATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTT--GGCGCCCACACC 16150 | || ||| || || || || ||||| | || || ||| ||| || ||||| Sbjct 23667 AAGGGGCATTCTCCTTGGCCTTTTTGAAAAGATCTC-TA-ACTCTTGAGGCACCAACACC 23610 Query 16151 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCAC 16209 |||||||||||| ||||| | || | ||| || | || || || ||| | ||||| Sbjct 23609 AACAAACATCTCAACAAACTCTGAACCTGAA-ATAGAGAAAAATGGAACACCTGCTTCAC 23551 Query 16210 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 16269 | ||||| || ||| || || ||||| || || ||||| ||| | || || ||| Sbjct 23550 CAGCAATAGCCTTGGCTAGCAGTGTCTTTCCGGTTCCTGGAGGACCAACAAGAAGAACAC 23491 Query 16270 CTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAA 16329 | ||||||| | || ||| || | | ||||| || | ||| ||||| || || | Sbjct 23490 CCTTTGGAATCCTAGCACCAACAGCAGTGAACCTCTCTGGCTTCTTCAGAAACTCTACGA 23431 Query 16330 TCTC 16333 ||| Sbjct 23430 CCTC 23427 >seq200694 Length=3324 Score = 89.7 bits (98), Expect = 6e-13 Identities = 181/260 (70%), Gaps = 14/260 (5%) Strand=Plus/Plus Query 13722 AATTACCGCGAGTCTTACGGACTGTTTGCATGCTCCGGAATCCTCTTCAACCATGAATCA 13781 |||||| | || | ||||| | || || ||| || || ||||||||||| |||||| Sbjct 1804 AATTACAGAGAAGCATACGGGATCTTCGCCTGCAATGGCATTCTCTTCAACCACGAATCA 1863 Query 13782 CCGAGACGAGGTGCAGACTTTGTGACCATGAAGATTAC-CGAG-GGTA--TC-AAACAAA 13836 || | |||||| | |||| ||||| ||||| || |||| |||| || || |||| Sbjct 1864 CCACGGAGAGGTGAAAACTTCGTGACACGTAAGATCACACGAGCGGTAGGTCGAATCAAA 1923 Query 13837 TCATGAAGGGTGA-AAAG-GAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGATTG 13894 | ||||| | | || || | || ||||| ||| || | ||| ||||| || Sbjct 1924 ----GTAGGGTTACAGAGCAAGCTGTTT---TTGGGGAACTTACAGGCGTCAAGAGACTG 1976 Query 13895 GGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGCCGA 13954 ||| ||| ||||| |||||||| |||||||| ||||| || || ||| | || || Sbjct 1977 GGGGTTCGCCGGAGACTACGTTGAAGCAATGTGGCTGATGCTACAGCAGGAGAAGGCGGA 2036 Query 13955 CGAATATGTAGTAGCAACGG 13974 ||| || || || || |||| Sbjct 2037 CGACTACGTGGTGGCGACGG 2056 >seq46817 Length=7747 Score = 89.7 bits (98), Expect = 6e-13 Identities = 181/260 (70%), Gaps = 14/260 (5%) Strand=Plus/Minus Query 13722 AATTACCGCGAGTCTTACGGACTGTTTGCATGCTCCGGAATCCTCTTCAACCATGAATCA 13781 |||||| | || | ||||| | || || ||| || || ||||||||||| |||||| Sbjct 7251 AATTACAGAGAAGCATACGGGATCTTCGCCTGCAATGGCATTCTCTTCAACCACGAATCA 7192 Query 13782 CCGAGACGAGGTGCAGACTTTGTGACCATGAAGATTAC-CGAG-GGTA--TC-AAACAAA 13836 || | |||||| | |||| ||||| ||||| || |||| |||| || || |||| Sbjct 7191 CCACGGAGAGGTGAAAACTTCGTGACACGTAAGATCACACGAGCGGTAGGTCGAATCAAA 7132 Query 13837 TCATGAAGGGTGA-AAAG-GAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGATTG 13894 | ||||| | | || || | || ||||| ||| || | ||| ||||| || Sbjct 7131 ----GTAGGGTTACAGAGCAAGCTGTTT---TTGGGGAACTTACAGGCGTCAAGAGACTG 7079 Query 13895 GGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGCCGA 13954 ||| ||| ||||| |||||||| |||||||| ||||| || || ||| | || || Sbjct 7078 GGGGTTCGCCGGAGACTACGTTGAAGCAATGTGGCTGATGCTACAGCAGGAGAAGGCGGA 7019 Query 13955 CGAATATGTAGTAGCAACGG 13974 ||| || || || || |||| Sbjct 7018 CGACTACGTGGTGGCGACGG 6999 >seq27346 Length=4931 Score = 89.7 bits (98), Expect = 6e-13 Identities = 181/260 (70%), Gaps = 14/260 (5%) Strand=Plus/Plus Query 13722 AATTACCGCGAGTCTTACGGACTGTTTGCATGCTCCGGAATCCTCTTCAACCATGAATCA 13781 |||||| | || | ||||| | || || ||| || || ||||||||||| |||||| Sbjct 1990 AATTACAGAGAAGCATACGGGATCTTCGCCTGCAATGGCATTCTCTTCAACCACGAATCA 2049 Query 13782 CCGAGACGAGGTGCAGACTTTGTGACCATGAAGATTAC-CGAG-GGTA--TC-AAACAAA 13836 || | |||||| | |||| ||||| ||||| || |||| |||| || || |||| Sbjct 2050 CCACGGAGAGGTGAAAACTTCGTGACACGTAAGATCACACGAGCGGTAGGTCGAATCAAA 2109 Query 13837 TCATGAAGGGTGA-AAAG-GAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGATTG 13894 | ||||| | | || || | || ||||| ||| || | ||| ||||| || Sbjct 2110 ----GTAGGGTTACAGAGCAAGCTGTTT---TTGGGGAACTTACAGGCGTCAAGAGACTG 2162 Query 13895 GGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGCCGA 13954 ||| ||| ||||| |||||||| |||||||| ||||| || || ||| | || || Sbjct 2163 GGGGTTCGCCGGAGACTACGTTGAAGCAATGTGGCTGATGCTACAGCAGGAGAAGGCGGA 2222 Query 13955 CGAATATGTAGTAGCAACGG 13974 ||| || || || || |||| Sbjct 2223 CGACTACGTGGTGGCGACGG 2242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618736044174000