Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq106419 163 3e-35 seq73953 96.9 4e-15 seq49990 96.9 4e-15 seq200694 89.7 6e-13 seq46817 89.7 6e-13 seq27346 89.7 6e-13 >seq106419 Length=70059 Score = 163 bits (180), Expect = 3e-35 Identities = 293/422 (69%), Gaps = 12/422 (3%) Strand=Plus/Minus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAA 9282 ||||| || || | || || || || || | |||| |||||| |||||| || ||| Sbjct 23842 TCAAGAATGTCTGCACGGTTGGTAGCTGCAACCACAATAATACCAGTGTTTCCTT--CAA 23785 Query 9283 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATT---CGCTG 9339 | |||||||| ||||||||||| ||||| | |||||||| | ||||||||| | || Sbjct 23784 AGCCATCCATTTCTGTCAAAAGCTGGTTCAGGGTTTGTTCTCTTTCATCATTACCCCCTC 23725 Query 9340 GCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 |||||| | || |||| | || || |||||||| ||||||| || || |||| Sbjct 23724 CAATACCAGTCCCTCT---TTGCCTCCCAACAGCATCAATTTCATCAACAAATACGATAC 23668 Query 9400 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAA 9459 | || ||| || ||| ||| || ||||| | ||| ||| ||| || ||||||| Sbjct 23667 AAGGGGCATTCTCCTTGGCCTTTTTGAAAAGATCTCTAACTCTTGAGGCACCAACACCAA 23608 Query 9460 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 9518 |||||||||| ||||| | || | ||| || | || || || ||| | |||||| Sbjct 23607 CAAACATCTCAACAAACTCTGAACCTGAA-ATAGAGAAAAATGGAACACCTGCTTCACCA 23549 Query 9519 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCC 9578 ||||| || ||| || || ||||| || || ||||| ||| | || || ||||| Sbjct 23548 GCAATAGCCTTGGCTAGCAGTGTCTTTCCGGTTCCTGGAGGACCAACAAGAAGAACACCC 23489 Query 9579 CGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATC 9638 ||||||| | || ||| || | | ||||| || | ||| ||||| || || | | Sbjct 23488 TTTGGAATCCTAGCACCAACAGCAGTGAACCTCTCTGGCTTCTTCAGAAACTCTACGACC 23429 Query 9639 TC 9640 || Sbjct 23428 TC 23427 >seq73953 Length=35596 Score = 96.9 bits (106), Expect = 4e-15 Identities = 190/281 (68%), Gaps = 10/281 (4%) Strand=Plus/Plus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| || ||||| || ||||| | ||| |||||||||||||||| ||||||||| | Sbjct 24256 AAACCCGTCCATTTCCGTCAACAATTGATTAATAGTTTGTTCCCTTTCATCATTTCCGCC 24315 Query 9341 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 | | ||| || | | |||| |||| || ||||| ||||||||||| || || ||||| Sbjct 24316 CCCAAGACCCGCCCCTCTTTGCCTTCCAACCGCATCTATCTCATCAATAAACACTATACA 24375 Query 9401 TGG-----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACA 9455 || | |||||| || | ||||| ||||| | |||||| || || ||| Sbjct 24376 AGGTGCTTTCGATTTT-----GCCTTCTCAAAAAGATCCCTAACCCTAGATGCACCAACA 24430 Query 9456 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 9515 || ||||| | || || || | | || | ||| || || || ||| | || Sbjct 24431 CCCACAAAAAGTTCAACGAACTCCGAAGCCGCACACGAGAAAAATGGCACACCCGCCTCT 24490 Query 9516 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 || |||| || | || | ||| ||||| || || ||||| Sbjct 24491 CCGGCAACCGCCCTAGCCAAAAGGGTCTTTCCGGTCCCTGG 24531 >seq49990 Length=8241 Score = 96.9 bits (106), Expect = 4e-15 Identities = 190/281 (68%), Gaps = 10/281 (4%) Strand=Plus/Minus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| || ||||| || ||||| | ||| |||||||||||||||| ||||||||| | Sbjct 4171 AAACCCGTCCATTTCCGTCAACAATTGATTAATAGTTTGTTCCCTTTCATCATTTCCGCC 4112 Query 9341 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 | | ||| || | | |||| |||| || ||||| ||||||||||| || || ||||| Sbjct 4111 CCCAAGACCCGCCCCTCTTTGCCTTCCAACCGCATCTATCTCATCAATAAACACTATACA 4052 Query 9401 TGG-----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACA 9455 || | |||||| || | ||||| ||||| | |||||| || || ||| Sbjct 4051 AGGTGCTTTCGATTTT-----GCCTTCTCAAAAAGATCCCTAACCCTAGATGCACCAACA 3997 Query 9456 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 9515 || ||||| | || || || | | || | ||| || || || ||| | || Sbjct 3996 CCCACAAAAAGTTCAACGAACTCCGAAGCCGCACACGAGAAAAATGGCACACCCGCCTCT 3937 Query 9516 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 || |||| || | || | ||| ||||| || || ||||| Sbjct 3936 CCGGCAACCGCCCTAGCCAAAAGGGTCTTTCCGGTCCCTGG 3896 >seq200694 Length=3324 Score = 89.7 bits (98), Expect = 6e-13 Identities = 181/260 (70%), Gaps = 14/260 (5%) Strand=Plus/Plus Query 7029 AATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATGAATCA 7088 |||||| | || | ||||| | || || ||| || || ||||||||||| |||||| Sbjct 1804 AATTACAGAGAAGCATACGGGATCTTCGCCTGCAATGGCATTCTCTTCAACCACGAATCA 1863 Query 7089 CCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTAC-CGAG-GGTA--TC-AAACAAA 7143 || | |||||| | |||| || ||| ||||| || |||| |||| || || |||| Sbjct 1864 CCACGGAGAGGTGAAAACTTCGTGACACGTAAGATCACACGAGCGGTAGGTCGAATCAAA 1923 Query 7144 TCATGAAGGGTGA-AAAG-GAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGATTG 7201 | ||||| | | || || | || ||||| ||| || | ||| ||||| || Sbjct 1924 ----GTAGGGTTACAGAGCAAGCTGTTT---TTGGGGAACTTACAGGCGTCAAGAGACTG 1976 Query 7202 GGGTCACGCGAAGGACTATGTTGAAGCCATGTGGCTCATGCTTCAACAAGAGGAAGCCGA 7261 ||| ||| ||||| |||||||| |||||||| ||||| || || ||| | || || Sbjct 1977 GGGGTTCGCCGGAGACTACGTTGAAGCAATGTGGCTGATGCTACAGCAGGAGAAGGCGGA 2036 Query 7262 CGAATATGTAGTAGCAACGG 7281 ||| || || || || |||| Sbjct 2037 CGACTACGTGGTGGCGACGG 2056 >seq46817 Length=7747 Score = 89.7 bits (98), Expect = 6e-13 Identities = 181/260 (70%), Gaps = 14/260 (5%) Strand=Plus/Minus Query 7029 AATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATGAATCA 7088 |||||| | || | ||||| | || || ||| || || ||||||||||| |||||| Sbjct 7251 AATTACAGAGAAGCATACGGGATCTTCGCCTGCAATGGCATTCTCTTCAACCACGAATCA 7192 Query 7089 CCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTAC-CGAG-GGTA--TC-AAACAAA 7143 || | |||||| | |||| || ||| ||||| || |||| |||| || || |||| Sbjct 7191 CCACGGAGAGGTGAAAACTTCGTGACACGTAAGATCACACGAGCGGTAGGTCGAATCAAA 7132 Query 7144 TCATGAAGGGTGA-AAAG-GAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGATTG 7201 | ||||| | | || || | || ||||| ||| || | ||| ||||| || Sbjct 7131 ----GTAGGGTTACAGAGCAAGCTGTTT---TTGGGGAACTTACAGGCGTCAAGAGACTG 7079 Query 7202 GGGTCACGCGAAGGACTATGTTGAAGCCATGTGGCTCATGCTTCAACAAGAGGAAGCCGA 7261 ||| ||| ||||| |||||||| |||||||| ||||| || || ||| | || || Sbjct 7078 GGGGTTCGCCGGAGACTACGTTGAAGCAATGTGGCTGATGCTACAGCAGGAGAAGGCGGA 7019 Query 7262 CGAATATGTAGTAGCAACGG 7281 ||| || || || || |||| Sbjct 7018 CGACTACGTGGTGGCGACGG 6999 >seq27346 Length=4931 Score = 89.7 bits (98), Expect = 6e-13 Identities = 181/260 (70%), Gaps = 14/260 (5%) Strand=Plus/Plus Query 7029 AATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATGAATCA 7088 |||||| | || | ||||| | || || ||| || || ||||||||||| |||||| Sbjct 1990 AATTACAGAGAAGCATACGGGATCTTCGCCTGCAATGGCATTCTCTTCAACCACGAATCA 2049 Query 7089 CCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTAC-CGAG-GGTA--TC-AAACAAA 7143 || | |||||| | |||| || ||| ||||| || |||| |||| || || |||| Sbjct 2050 CCACGGAGAGGTGAAAACTTCGTGACACGTAAGATCACACGAGCGGTAGGTCGAATCAAA 2109 Query 7144 TCATGAAGGGTGA-AAAG-GAGTTCATTGAATTGGGTAACATAAACGCGGAGAGAGATTG 7201 | ||||| | | || || | || ||||| ||| || | ||| ||||| || Sbjct 2110 ----GTAGGGTTACAGAGCAAGCTGTTT---TTGGGGAACTTACAGGCGTCAAGAGACTG 2162 Query 7202 GGGTCACGCGAAGGACTATGTTGAAGCCATGTGGCTCATGCTTCAACAAGAGGAAGCCGA 7261 ||| ||| ||||| |||||||| |||||||| ||||| || || ||| | || || Sbjct 2163 GGGGTTCGCCGGAGACTACGTTGAAGCAATGTGGCTGATGCTACAGCAGGAGAAGGCGGA 2222 Query 7262 CGAATATGTAGTAGCAACGG 7281 ||| || || || || |||| Sbjct 2223 CGACTACGTGGTGGCGACGG 2242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588073871433000