Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq138370 197 3e-45 seq31517 167 5e-36 seq40372 152 1e-31 seq38170 138 3e-27 seq33895 93.3 9e-14 >seq138370 Length=13449 Score = 197 bits (218), Expect = 3e-45 Identities = 177/222 (80%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| | |||||| ||||| ||||| |||||||| |||||||||||||| | ||| Sbjct 4832 TCTTAATCTGAGAACAAGATGAAGGGTGGATTCTTTTTGGATATTGTAATCGGCTAAAGT 4773 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | || ||||| |||||||| || || |||||||||| ||| |||||||| |||||||| Sbjct 4772 ACGGCCGTCTTCAAGCTGCTTTCCGGCAAAGATAAGTCTTTGCTGGTCTGGTGGAATGCC 4713 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||||||||| || || ||||||||| || || ||||| ||||| || |||||||| Sbjct 4712 TTCTTTGTCTTGGATCTTGGCCTTGACGTTGTCTATTGTGTCGGAACTCTCGACTTCAAG 4653 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | |||||||| || | || || || || | |||||| Sbjct 4652 AGTGATTGTCTTTCCGGTGAGGGTCTTAACAAAGATTTGCAT 4611 Score = 159 bits (176), Expect = 8e-34 Identities = 162/211 (77%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 |||||| ||||||||||||||||| || ||||| ||||| ||||| || ||||||||||| Sbjct 5504 AACAAGATGAAGAGTGGACTCTTTCTGGATATTATAATCAGCAAGTGTCCTCCCATCTTC 5445 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | || ||||| || ||||| | | || ||||| || || || || || || || || Sbjct 5444 CAATTGTTTACCAGCAAAGATCAACCTCTGCTGGTCCGGTGGGATTCCCTCCTTATCCTG 5385 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || ||| || || |||||||| ||||| |||||||| || | |||| |||||| Sbjct 5384 AATCTTCGCCTTCACATTATCAATGGTATCCGAGCTTTCCACCTCCAAAGTAATCGTCTT 5325 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||| || || || || ||||| | |||||| Sbjct 5324 TCCGGTTAATGTCTTAACGAAAATCTGCATT 5294 Score = 154 bits (170), Expect = 3e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || |||||||||||||| || || |||||||| || || |||| || || ||||| || Sbjct 5041 TGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGCCAGGGTTCGGCCGTCCTCGAGTTGT 4982 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || ||||| || || | |||||||||||| || ||||||||||||||||| || || Sbjct 4981 TTTCCGGCGAAAATGAGCCTTTGTTGGTCTGGGGGGATGCCTTCTTTGTCTTGGATCTTA 4922 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 |||||||| ||||||||||| || ||||| ||||| | || | || ||||| || Sbjct 4921 GCTTTGACGTTATCAATGGTGTCAGAGCTTTCAACTTCCAAAGTGATGGTTTTTCCGGTG 4862 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | ||||| Sbjct 4861 AGGGTCTTAACGAAAATCTGCAT 4839 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || || || || || || || |||||||| || | ||| | |||||||| Sbjct 5275 ACAAGGTGGAGGGTAGATTCCTTCTGGATGTTGTAATCAGCCAAAGTGCGACCATCTTCC 5216 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || || |||||||| | ||||| ||||| || || ||||| || ||||| Sbjct 5215 AGCTGTTTTCCAGCAAAGATAAGCCTCTGTTGATCTGGTGGGATTCCTTCCTTATCTTGG 5156 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || || ||||| |||||||||||||| || || ||||| | |||| |||||| Sbjct 5155 ATCTTAGCTTTCACGTTATCAATGGTGTCCGAGCTCTCGACTTCCAAAGTAATCGTCTTC 5096 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || ||||| | ||||| Sbjct 5095 CCGGTCAATGTCTTAACGAAAATCTGCAT 5067 >seq31517 Length=16670 Score = 167 bits (184), Expect = 5e-36 Identities = 170/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| | |||||||| || |||||||||||||| || ||||||||||| | ||| Sbjct 2560 TCTCAATCTGAGGACAAGGTGGAGTGTGGACTCTTTTTGGATGTTGTAATCGGCCAAAGT 2501 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | || || ||||| ||||| || || ||||| | || ||| || ||||||||||| || Sbjct 2500 ACGGCCGTCCTCGAGTTGCTTTCCGGCAAAGATCAATCTTTGCTGATCTGGAGGAATTCC 2441 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| || ||||| ||||| ||||||||| ||||| || || || || || || || || Sbjct 2440 TTCCTTATCTTGGATTTTGGCCTTGACGTTATCAATTGTATCAGAGCTCTCGACCTCGAG 2381 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| |||||||| || | ||||| ||||| | ||||| Sbjct 2380 AGTAATGGTCTTTCCAGTTAGGGTTTTCACGAAGATCTGCAT 2339 Score = 156 bits (172), Expect = 9e-33 Identities = 157/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || || || ||||| |||||||||||||| ||||| | || |||||||| || Sbjct 2770 GTGAAGGGTCGATTCCTTTTGGATATTGTAATCGGCTAGAGTACGACCGTCTTCGAGTTG 2711 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| | || || ||||||||||| || ||||| ||||| || || || Sbjct 2710 CTTTCCGGCGAAGATCAATCTCTGCTGGTCTGGAGGGATTCCTTCCTTGTCCTGGATCTT 2651 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || ||||| || || ||||| ||||| || ||||| | ||| | |||||||| || Sbjct 2650 GGCTTTCACGTTATCGATAGTGTCAGAACTCTCGACTTCCAAGGTGATTGTCTTTCCGGT 2591 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | ||||| ||||| | |||||| Sbjct 2590 GAGGGTTTTGACGAAGATTTGCAT 2567 Score = 150 bits (166), Expect = 4e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||||||||| || || ||||||||||| || ||||| || || |||||||| |||||| Sbjct 3225 TGAAGAGTGGATTCCTTCTGAATATTGTAGTCAGCAAGTGTCCTTCCATCTTCAAGCTGC 3166 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || ||||| | | || |||||||| || || || || || ||||| || ||| Sbjct 3165 TTACCAGCAAAGATTAACCTCTGCTGGTCTGGTGGGATACCCTCCTTATCTTGGATCTTT 3106 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| || || || |||||||| ||||| || || || | || | |||||||| ||| Sbjct 3105 GCCTTAACATTGTCTATGGTGTCTGAACTCTCAACCTCCAAAGTGATGGTCTTTCCGGTC 3046 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 || || || ||||| | ||||| Sbjct 3045 AATGTCTTAACGAAGATCTGCAT 3023 Score = 136 bits (150), Expect = 9e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||| ||||| || || || ||||| ||||| || ||||| || | ||||| || Sbjct 3460 AACCAAGTGTAGAGTCGATTCCTTCTGAATGTTGTAGTCAGCAAGCGTACGACCATCCTC 3401 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||||||||| ||||| | || || || ||||| || || ||||| |||||||| Sbjct 3400 GAGCTGCTTACCTGCAAAGATCAATCTCTGCTGATCTGGTGGGATCCCTTCCTTGTCTTG 3341 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || ||| ||| ||||| || || || || || || || || || | || | ||||| Sbjct 3340 GATCTTTGCCTTAACGTTATCGATAGTATCAGAGCTCTCAACCTCCAAAGTGATTGTCTT 3281 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| ||||| || || || || | ||||| Sbjct 3280 TCCAGTCAACGTCTTAACAAAGATCTGCAT 3251 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | |||||| || || || || ||||||||||| || ||||| || | || || || Sbjct 3688 AACCAAGTGAAGGGTTGATTCCTTCTGAATATTGTAGTCAGCAAGGGTACGGCCGTCCTC 3629 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||||||| || ||||| | | || || || || || || ||||| || || || Sbjct 3628 GAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCCGGTGGGATCCCTTCCTTATCCTG 3569 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| ||| |||||| || ||||| || |||||||| ||||| || | || | ||||| Sbjct 3568 AATCTTTGCCTTGACATTGTCAATAGTATCCGAACTCTCCACCTCCAAAGTGATGGTCTT 3509 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| ||| || || || | ||||| Sbjct 3508 CCCAGTCAGAGTCTTCACAAAGATCTGCAT 3479 >seq40372 Length=8222 Score = 152 bits (168), Expect = 1e-31 Identities = 160/209 (77%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||||||||| || || || || || || ||||| || || ||||| || ||| Sbjct 1278 ACGAGGTGAAGAGTTGATTCCTTCTGGATGTTATAATCAGCTAGGGTTCTGCCGTCTCTT 1337 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || |||||||| || |||||||| |||||||||||||||||||||||||| Sbjct 1338 AGCTGTTTCCCGGCGAAGATGAGCCGTTGTTGATCTGGAGGAATGCCTTCTTTGTCTTGG 1397 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||||| || || || || || ||||| || || || || |||| || ||| Sbjct 1398 ATTTTGGCTTTGACATTATCGATTGTATCAGAACTCTCTAC-TCCAGAGTAATGGTTTTT 1456 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| ||||| | ||||| Sbjct 1457 CCAGTAAGGGTTTTCACGAAGATCTGCAT 1485 Score = 113 bits (124), Expect = 1e-19 Identities = 159/216 (74%), Gaps = 7/216 (3%) Strand=Plus/Plus Query 194925 TCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCC 194984 ||||| ||| || || | || || || |||||| |||||||||| || || ||||| | Sbjct 821 TCTCAGAACCAGATGCAACGTAGATTCCTTTTGA-TATTGTAATCCGCTAG-GTTCTGC- 877 Query 194985 ATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTT 195044 |||||| | ||| || || |||||||| | || || || ||||||||||| || || || Sbjct 878 ATCTTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGAATACCCTCCTT 937 Query 195045 GTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAAC 195104 ||| ||||| || ||| ||||| | || || || |||||||| || || | |||| Sbjct 938 GTCCTGAATCTTGGCCTTCACGTTAT--ATTGTATCAGAACTTTCAACCTCCAACGTAA- 994 Query 195105 CGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || | ||| ||||| | ||||| Sbjct 995 TGTTTTTCCCGTTAATG-TTTCACGAAGATCTGCAT 1029 >seq38170 Length=7308 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || ||||| || || || || ||||| |||| || ||||| || ||||| Sbjct 6464 ACAAGGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCGGATAGGGTTCTGCCGCCTTCG 6523 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || || ||||| || ||||||||||| || || || |||||||||||||| Sbjct 6524 AGCTGTTTTCCGGCAAAGATGAGACGTTGTTGGTCCGGTGGGATACCTTCTTTGTCTTGG 6583 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||| || || |||||||| || ||| || || ||||| | || ||| Sbjct 6584 ATCTTGGCTTTGACATTGTCGATGGTGTCAGAGGATTCAACCTCTAGGGTTATGGTTTTT 6643 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || | ||||| ||||| | ||||| Sbjct 6644 TCAGTTAGGGTTTTCACGAAGATCTGCAT 6672 >seq33895 Length=17743 Score = 93.3 bits (102), Expect = 9e-14 Identities = 144/194 (74%), Gaps = 10/194 (5%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGA-CTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC-CCATCTT 194989 ||||| ||||||||| | ||| | | || |||||||| |||||||| | ||||||| Sbjct 11095 ACAAGATGAAGAGTGATTCGCTTCTGGGATGTTGTAATCCGCAAGAGTCCAGGCCATCTT 11036 Query 194990 CGAGCTGC--TTACCTGCGAAGATAAGTCGTTGTT-GGTCTGGAGGAATGCCTTCTTTG- 195045 | ||||| || || ||||| || |||||||||| ||||||| || || || |||||| Sbjct 11035 CAAGCTGTATTTTCCGGCGAAAATCAGTCGTTGTTGGGTCTGGTGGGATTCC-TCTTTGT 10977 Query 195046 TCT-TGAAT-TTTTTGCTTGA-CGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||| ||||| || ||| | |||| |||||| ||| || ||||| ||||| | || Sbjct 10976 TCTATGAATCTTGGCTCTTAAGCGTTGACAATGGGGTCAGAGCTTTCGACTTCCAAAGTG 10917 Query 195103 ACCGTCTTTCCTGT 195116 | ||||| || || Sbjct 10916 ATGGTCTTACCGGT 10903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1105805896127025