Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq38170 105 4e-18 seq138370 93.3 3e-14 seq31517 93.3 3e-14 seq40372 84.2 1e-11 >seq38170 Length=7308 Score = 105 bits (116), Expect = 4e-18 Identities = 144/199 (72%), Gaps = 8/199 (4%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || ||| ||| | | || ||||||||||||||||| Sbjct 6481 TTCCTTCTGGATGTTGTAGTCGGATAGGGTTCTGCCGCCTTCGAGCTGTTTTCCGGCAAA 6540 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || ||||| ||||| | || | || || ||||| ||||| |||||| | Sbjct 6541 GATGAGACGTTGTTGGTCCGGTGGGATACCTTCTTTGTCTTGGATCTTGGCTTTGAC--A 6598 Query 34910 TGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | | ||||| ||| || ||||| || | ||||||||||||| | || || || | Sbjct 6599 T--TGTCGATGGTGTCAGAGGATTCAACCTCTAGGGTTATGGTTTTTTCAGTTAGGGTTT 6656 Query 34966 TCACAAAGATCTGCATATT 34984 |||| ||||||||||| || Sbjct 6657 TCACGAAGATCTGCATCTT 6675 >seq138370 Length=13449 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| || | ||| |||||||| ||||| || || | ||| |||| | || || Sbjct 5047 ACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGCCAGGGTTCGGCCGTCCTCG 4988 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || ||||||||||| || || || | ||| |||||| | || | || || ||||| Sbjct 4987 AGTTGTTTTCCGGCGAAAATGAGCCTTTGTTGGTCTGGGGGGATGCCTTCTTTGTCTTGG 4928 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||||||| | || | ||| | ||||| || | || ||||||||| Sbjct 4927 ATCTTAGCTTTGACGTTATCAATGGTGTCAGAGCTTTCAACTTCCAAAGTGATGGTTTTT 4868 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| ||||| || || |||||||| Sbjct 4867 CCGGTGAGGGTCTTAACGAAAATCTGCAT 4839 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG-- 34812 ||||| || || || | ||| | |||| ||| |||||| || || || || || | Sbjct 4837 CCTCCTCTTAATCTGAGAACAAGATGAAGGGTGGATTCTTTTTGGATATTGTAATCGGCT 4778 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| | || | || || ||||| ||||||||||| || |||| |||||||||| | | Sbjct 4777 AAAG--TACGGCCGTCTTCAAGCTGCTTTCCGGCAAAGATAAGTCTTTGCTGGTCTGGTG 4720 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || || ||||| ||||| |||||| |||| | || ||| | Sbjct 4719 GAATGCCTTCTTTGTCTTGGATCTTGGCCTTGACGTTGTCTATTGTGTCGGAACTCTCGA 4660 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || || || ||||| ||||| ||||| |||||||| ||||| Sbjct 4659 CTTCAAGAGTGATTGTCTTTCCGGTGAGGGTCTTAACAAAGATTTGCAT 4611 >seq31517 Length=16670 Score = 93.3 bits (102), Expect = 3e-14 Identities = 151/215 (70%), Gaps = 8/215 (4%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||| | || ||| ||||||||||| ||||| | ||| | || |||| || Sbjct 3460 AACCAAGTGTAGAGTCGATTCCTTCTGAATGTTGTAGTCAGCAAGCGTACGACCATCCTC 3401 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || || ||||| || | || ||||| ||| | || | ||| |||||||| Sbjct 3400 GAGCTGCTTACCTGCAAAGATCAATCTCTGCTGATCTGGTGGGATCCCTTCCTTGTCTTG 3341 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGG 34947 ||||| || | | | | ||||||| ||| | |||||| || | || || | Sbjct 3340 GATCTT-TGCCTTA---ACGTTATCGATAGTATCAGAGCTCTCAACCTCCAAAGTGATTG 3285 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | ||||| || | ||||| ||||||||||||||| Sbjct 3284 TCTTTCCAGTCAACGTCTTAACAAAGATCTGCATA 3250 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || ||||| | | ||||||||||| || ||| ||||| ||||||||||| | Sbjct 3021 CCACCTCTCAATCGAAGAACCAAGTGAAGGGTTGATTCCTTCTGGATGTTATAGTCGGCT 2962 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || | || || |||||||| |||||||| || | | ||||||||| | || Sbjct 2961 AGAGTACGGCCGTCTTCAAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGA 2902 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG-GC-CTC 34930 | || ||||| || ||||| ||| || | |||| || | ||| || || Sbjct 2901 ATACCTTCCTTATCTTGGATCTTGGCTTTCAC----GTTATCAATGGTATCCGAGCTTTC 2846 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||| || | |||||||| ||||| || || ||||| || ||||| ||||| Sbjct 2845 AACTTCCAAAGTTATGGTCTTTCCAGTCAGGGTCTTAACGAAGATTTGCAT 2795 Score = 82.4 bits (90), Expect = 5e-11 Identities = 149/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| || ||| |||||||| || ||||| | |||| | || | || || Sbjct 3688 AACCAAGTGAAGGGTTGATTCCTTCTGAATATTGTAGTCAGCAAGGGTACGGCCGTCCTC 3629 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || || ||||| || | | ||||| || | || | ||| ||||| || Sbjct 3628 GAGCTGCTTACCAGCAAAGATCAACCTCTGCTGATCCGGTGGGATCCCTTCCTTATCCTG 3569 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGG 34947 |||||| ||||| || | || || | ||| ||| || || | || |||| Sbjct 3568 AATCTTTGCCTTGAC--AT--TGTCAATAGTATCCGAACTCTCCACCTCCAAAGTGATGG 3513 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || ||||||||||||||||||||||| Sbjct 3512 TCTTCCCAGTCAGAGTCTTCACAAAGATCTGCAT 3479 >seq40372 Length=8222 Score = 84.2 bits (92), Expect = 1e-11 Identities = 160/228 (70%), Gaps = 7/228 (3%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| |||| ||||| || | || ||| || ||| | || || |||| Sbjct 810 CCTCCCCTCAATCTCAGAACCAGATGCAACGTAGATTCCTTTTGA-TATTGTAATCCGCT 868 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| ||| | |||| |||| |||||| ||||| || || | || ||||| ||| | || Sbjct 869 AGG-TTC-TGCATCTTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGA 926 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| |||||| || ||| | ||| | ||| ||||| Sbjct 927 ATACCCTCCTTGTCCTGAATCTTGGCCTTCACG--TTATATTGTATCAGAACTTTCAACC 984 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | || || ||||||||||| | || ||||| |||||||||||| Sbjct 985 TCCAACGTAAT-GTTTTTCCCGTTAATGT-TTCACGAAGATCTGCATA 1030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323610555252600