Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Silybum_20marianum_20[genbank_20GCA_5F001541825.1_202016-01-26] 258,575 sequences; 1,477,574,977 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq138370 143 2e-29 seq31517 120 2e-22 seq40372 105 5e-18 >seq138370 Length=13449 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||||||||| | | ||| | ||||||||| ||||||||||| |||||||||||||| Sbjct 4837 CCTCCTCTTAATCTGAGAACAAGATGAAGGGTGGATTCTTTTTGGATATTGTAATCGGCT 4778 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | | || || | ||||| || ||||| || | | || || || || ||| Sbjct 4777 AAAGTACGGCCGTCTTCAAGCTGCTTTCCGGCAAAGATAAGTCTTTGCTGGTCTGGTGGA 4718 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||| ||||| || || || || | |||| ||||| || | || ||| Sbjct 4717 ATGCCTTCTTTGTCTTGGATCTTGGCCTTGACGTTGTCTATTGTGTCGGAACTCTCGACT 4658 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||| || || ||||| | || || ||||| || ||||| Sbjct 4657 TCAAGAGTGATTGTCTTTCCGGTGAGGGTCTTAACAAAGATTTGCAT 4611 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||| |||| || | || | || ||||||||||| || || || |||||||| | Sbjct 5295 TTCCTCCCCTTAGCCGAAGCACAAGGTGGAGGGTAGATTCCTTCTGGATGTTGTAATCAG 5236 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | ||| | |||| |||| || || || ||||| || | | ||||||||| || | Sbjct 5235 CCAAAGTGCGACCATCTTCCAGCTGTTTTCCAGCAAAGATAAGCCTCTGTTGATCTGGTG 5176 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || ||||| |||||||| || || ||| || | || | ||||| || | || | Sbjct 5175 GGATTCCTTCCTTATCTTGGATCTTAGCTTTCACGTTATCAATGGTGTCCGAGCTCTCGA 5116 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| | ||| | ||| || ||||| || || || || || |||||||| Sbjct 5115 CTTCCAAAGTAATCGTCTTCCCGGTCAATGTCTTAACGAAAATCTGCAT 5067 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| || || || ||||| || || |||||||| || | |||| | | || || Sbjct 5047 ACCAAATGGAGAGTGGACTCTTTCTGGATGTTGTAATCAGCCAGGGTTCGGCCGTCCTCG 4988 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||| || || || || || | | ||||| || || || ||||||||||| ||||| Sbjct 4987 AGTTGTTTTCCGGCGAAAATGAGCCTTTGTTGGTCTGGGGGGATGCCTTCTTTGTCTTGG 4928 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || ||| || | || | |||||||| |||| ||||| | ||||| ||||| Sbjct 4927 ATCTTAGCTTTGACGTTATCAATGGTGTCAGAGCTTTCAACTTCCAAAGTGATGGTTTTT 4868 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| | || || || || |||||||| Sbjct 4867 CCGGTGAGGGTCTTAACGAAAATCTGCAT 4839 >seq31517 Length=16670 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||||||||| || | | || || |||||||| ||||| ||||| ||||||||||||| Sbjct 2795 TTCCTCCTCTCAACCTGAGGACCAAGTGAAGGGTCGATTCCTTTTGGATATTGTAATCGG 2736 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | | ||| | | || || | |||||| || || || ||||| | ||| || || || | Sbjct 2735 CTAGAGTACGACCGTCTTCGAGTTGCTTTCCGGCGAAGATCAATCTCTGCTGGTCTGGAG 2676 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || ||||| || || || || || ||| || | || | ||||||||| | || | Sbjct 2675 GGATTCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTATCGATAGTGTCAGAACTCTCGA 2616 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| | |||| || || ||||| | ||||| || || || ||||| Sbjct 2615 CTTCCAAGGTGATTGTCTTTCCGGTGAGGGTTTTGACGAAGATTTGCAT 2567 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| || | | || | || || || || |||||||| || ||||||||||| Sbjct 2565 CCTCCTCTCAATCTGAGGACAAGGTGGAGTGTGGACTCTTTTTGGATGTTGTAATCGGCC 2506 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | | | || || | |||||| || ||||| ||||| | || ||||| || ||| Sbjct 2505 AAAGTACGGCCGTCCTCGAGTTGCTTTCCGGCAAAGATCAATCTTTGCTGATCTGGAGGA 2446 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| |||||||| ||||| || || | || | || ||||| | || || Sbjct 2445 ATTCCTTCCTTATCTTGGATTTTGGCCTTGACGTTATCAATTGTATCAGAGCTCTCGACC 2386 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| | || || || |||| ||||| || || |||||||| Sbjct 2385 TCGAGAGTAATGGTCTTTCCAGTTAGGGTTTTCACGAAGATCTGCAT 2339 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || |||||||| || | ||| || || || || ||||| || || || ||||| || || Sbjct 3477 CCACCTCTTAATCGAAGAACCAAGTGTAGAGTCGATTCCTTCTGAATGTTGTAGTCAGCA 3418 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || | |||||||||||||| ||||| | ||| ||||| || || Sbjct 3417 AGCGTACGACCATCCTCGAGCTGCTTACCTGCAAAGATCAATCTCTGCTGATCTGGTGGG 3358 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || ||||| || ||| || || | || | ||| ||||| | || || Sbjct 3357 ATCCCTTCCTTGTCTTGGATCTTTGCCTTAACGTTATCGATAGTATCAGAGCTCTCAACC 3298 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||||| || || || || || || || ||||| |||||||| Sbjct 3297 TCCAAAGTGATTGTCTTTCCAGTCAACGTCTTAACAAAGATCTGCAT 3251 >seq40372 Length=8222 Score = 105 bits (116), Expect = 5e-18 Identities = 164/227 (72%), Gaps = 7/227 (3%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| || || | | ||| | ||| | |||||||| ||||| ||||||||||| || Sbjct 810 CCTCCCCTCAATCTCAGAACCAGATGCAACGTAGATTCCTTTTG-ATATTGTAATCCGCT 868 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||||| |||| ||||| || || || || || ||||||||||| ||||| || ||| Sbjct 869 AG-GTTCTG-CATCTTCCAACTGTTTGCCGGCGAAGATCAAACGCTGCTGATCTGGAGGA 926 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || || || |||| | ||| | || || || || ||||| |||| || Sbjct 927 ATACCCTCCTTGTCCTGAA--TCTTGGCCTTCACGTTATATTGTATCAGAACTTTCAACC 984 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | || | ||||| || ||||| | ||| || || |||||||| Sbjct 985 TCCAACGT-AATGTTTTTCCCGTTAATG-TTTCACGAAGATCTGCAT 1029 Score = 96.9 bits (106), Expect = 3e-15 Identities = 144/203 (71%), Gaps = 1/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| || ||||| || || || || ||||| || | |||||| | || | || Sbjct 1284 TGAAGAGTTGATTCCTTCTGGATGTTATAATCAGCTAGGGTTCTGCCGTCTCTTAGCTGT 1343 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || || || | || |||||||| || |||||||||||||| ||||| ||||| Sbjct 1344 TTCCCGGCGAAGATGAGCCGTTGTTGATCTGGAGGAATGCCTTCTTTGTCTTGGATTTTG 1403 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| | || | || ||||| | || || || ||||| | ||||| || || Sbjct 1404 GCTTTGACATTATCGATTGTATCAGAACTCTCTAC-TCCAGAGTAATGGTTTTTCCAGTA 1462 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | ||||| || || |||||||| Sbjct 1463 AGGGTTTTCACGAAGATCTGCAT 1485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395029575061275